MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-365K07
Chromosome	13 (Build37)
Map Location	105,253,599 - 105,254,095
singlet/doublet	singlet
Overlap gene	Adamts6
Upstream gene	LOC100040045, Ppia-ps13_1282.1, Sfrs12, Erbb2ip, LOC100040086, D130037M23Rik, Nln, Sgtb, 2410002O22Rik, LOC100040518, Trim23, Ppwd1, Cenpk, LOC667518
Downstream gene	Sdccag10, 3110031B13Rik, A930021C24Rik, EG238836, Rgs7bp, 4933425L06Rik, LOC100040646, LOC100040656, Rnf180, Htr1a
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC100040045 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040045
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Ppia-ps13_1282.1 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:606728
definition	note : peptidylprolyl isomerase A pseudogene 13_1282.1 pseudo : _no_value

name	Sfrs12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:218543 MGI:2145245
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Erbb2ip (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:59079 MGI:1890169
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC100040086 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040086
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 12 ESTs

name	D130037M23Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:328330 MGI:3027005
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 23 ESTs

name	Nln (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75805 MGI:1923055
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sgtb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:218544 MGI:2444615
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2410002O22Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66975 MGI:1914225
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040518 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040518
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 ESTs, 1 Protein

name	Trim23 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:81003 MGI:1933161
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ppwd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:238831 MGI:2443069
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cenpk (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:60411 MGI:1926210
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Adamts6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:108154 MGI:1347348
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667518 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667518
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 330 ESTs, 6 Proteins pseudo : _no_value

name	Sdccag10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67285 MGI:1914535
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	3110031B13Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67288 MGI:1914538
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	A930021C24Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:77803 MGI:1925053
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG238836 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:238836 MGI:3645099
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 37 ESTs, 26 Proteins

name	Rgs7bp (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:52882 MGI:106334
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4933425L06Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66763 MGI:1914013
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040646 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040646
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 Protein

name	LOC100040656 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040656
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 Protein

name	Rnf180 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71816 MGI:1919066
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Htr1a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15550 MGI:96273
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040045 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149264649 GeneID:100040045
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : similar to hCG1657676 transcript_id : XM_001473995.1

name	Sfrs12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129995 GeneID:218543 MGI:2145245
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : splicing factor, arginine/serine-rich 12 transcript_id : NM_172592.2

name	Erbb2ip (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:54607111 GeneID:59079 MGI:1890169
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Erbb2 interacting protein transcript_id : NM_021563.2

name	Erbb2ip (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:54607113 GeneID:59079 MGI:1890169
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Erbb2 interacting protein transcript_id : NM_001005868.1

name	LOC100040086 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149264653 GeneID:100040086
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 12 ESTs product : hypothetical protein LOC100040086 transcript_id : XM_001474060.1

name	D130037M23Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149264655 GeneID:328330 MGI:3027005
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 23 ESTs product : RIKEN cDNA D130037M23 gene transcript_id : XM_001474094.1

name	Nln (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:28077050 GeneID:75805 MGI:1923055
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : neurolysin (metallopeptidase M3 family) transcript_id : NM_029447.1

name	Sgtb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21450230 GeneID:218544 MGI:2444615
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta transcript_id : NM_144838.1

name	2410002O22Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:13385363 GeneID:66975 MGI:1914225
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2410002O22 gene transcript_id : NM_025879.1

name	LOC100040518 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149264673 GeneID:100040518
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 ESTs, 1 Protein product : hypothetical protein LOC100040518 transcript_id : XM_001475402.1

name	Trim23 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802155 GeneID:81003 MGI:1933161
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tripartite motif protein 23 transcript_id : NM_030731.2

name	Ppwd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142386455 GeneID:238831 MGI:2443069
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : peptidylprolyl isomerase domain and WD repeat containing 1 transcript_id : NM_172807.2

name	Cenpk (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802527 GeneID:60411 MGI:1926210
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : centromere protein K transcript_id : NM_181061.3

name	Cenpk (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:11140826 GeneID:60411 MGI:1926210
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : centromere protein K transcript_id : NM_021790.1

name	Adamts6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486613 GeneID:108154 MGI:1347348
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6 transcript_id : NM_001081020.1

name	Sdccag10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110625680 GeneID:67285 MGI:1914535
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : serologically defined colon cancer antigen 10 transcript_id : NM_026072.1

name	3110031B13Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:66955867 GeneID:67288 MGI:1914538
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 3110031B13 gene transcript_id : NM_026075.2

name	A930021C24Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:58037508 GeneID:77803 MGI:1925053
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA A930021C24 gene transcript_id : NM_029984.1

name	EG238836 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94395653 GeneID:238836 MGI:3645099
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 37 ESTs, 26 Proteins product : predicted gene, EG238836 transcript_id : XM_138832.4

name	Rgs7bp (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119360349 GeneID:52882 MGI:106334
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : regulator of G-protein signalling 7 binding protein transcript_id : NM_029879.2

name	4933425L06Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802691 GeneID:66763 MGI:1914013
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4933425L06 gene transcript_id : NM_025751.2

name	LOC100040646 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149264681 GeneID:100040646
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 Protein product : hypothetical protein LOC100040646 transcript_id : XM_001475762.1

name	LOC100040656 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149264683 GeneID:100040656
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 Protein product : hypothetical protein LOC100040656 transcript_id : XM_001475779.1

name	Rnf180 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142373127 GeneID:71816 MGI:1919066
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ring finger protein 180 transcript_id : NM_027934.2

name	Htr1a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144227220 GeneID:15550 MGI:96273
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : 5-hydroxytryptamine (serotonin) receptor 1A transcript_id : NM_008308.3

name	LOC100040045 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149264650 GeneID:100040045
definition	codon_start : 1 product : similar to hCG1657676 protein_id : XP_001474045.1

name	Sfrs12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369842 CCDS:CCDS26743.1 GeneID:218543 MGI:2145245
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005681 - spliceosome complex [Evidence IEA] GO_function : GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006397 - mRNA processing [Evidence IEA]; GO:0000398 - nuclear mRNA splicing, via spliceosome [Evidence IEA] codon_start : 1 product : splicing factor, arginine/serine-rich 12 protein_id : NP_766180.1

name	Erbb2ip (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:54607112 CCDS:CCDS26745.1 GeneID:59079 MGI:1890169
definition	GO_component : GO:0016323 - basolateral plasma membrane [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006605 - protein targeting [Evidence IDA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : Erbb2 interacting protein isoform 2 protein_id : NP_067538.2

name	Erbb2ip (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:54607114 CCDS:CCDS26744.1 GeneID:59079 MGI:1890169
definition	GO_component : GO:0016323 - basolateral plasma membrane [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006605 - protein targeting [Evidence IDA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : Erbb2 interacting protein isoform 1 protein_id : NP_001005868.1

name	LOC100040086 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149264654 GeneID:100040086
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474110.1

name	D130037M23Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149264656 GeneID:328330 MGI:3027005
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474144.1

name	Nln (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28077051 GeneID:75805 MGI:1923055
definition	GO_function : GO:0008233 - peptidase activity [Evidence IEA] codon_start : 1 product : neurolysin (metallopeptidase M3 family) protein_id : NP_083723.1

name	Sgtb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21450231 CCDS:CCDS26746.1 GeneID:218544 MGI:2444615
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS]; GO:0046982 - protein heterodimerization activity [Evidence ISS]; GO:0042803 - protein homodimerization activity [Evidence ISS] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta protein_id : NP_659087.1

name	2410002O22Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27229027 GeneID:66975 MGI:1914225
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC66975 protein_id : NP_080155.2

name	LOC100040518 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149264674 GeneID:100040518
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475452.1

name	Trim23 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29789263 CCDS:CCDS26747.1 GeneID:81003 MGI:1933161
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0000139 - Golgi membrane [Evidence ISS]; GO:0005622 - intracellular [Evidence IEA]; GO:0005765 - lysosomal membrane [Evidence ISS]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0019003 - GDP binding [Evidence ISS]; GO:0005525 - GTP binding [Evidence ISS] [Evidence IEA]; GO:0003924 - GTPase activity [Evidence ISS]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0004842 - ubiquitin-protein ligase activity [Evidence ISS]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0016567 - protein ubiquitination [Evidence ISS]; GO:0007046 - ribosome biogenesis [Evidence IEA]; GO:0006364 - rRNA processing [Evidence IEA]; GO:0007264 - small GTPase mediated signal transduction [Evidence IEA] codon_start : 1 note : tripartite motif protein TRIM23; ADP-ribosylation factor domain protein 1, 64kD product : tripartite motif protein 23 protein_id : NP_109656.1

name	Ppwd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27370202 CCDS:CCDS26748.1 GeneID:238831 MGI:2443069
definition	GO_function : GO:0016853 - isomerase activity [Evidence IEA]; GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA] GO_process : GO:0006457 - protein folding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : peptidylprolyl isomerase domain and WD repeat containing 1 protein_id : NP_766395.1

name	Cenpk (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:11140827 CCDS:CCDS26749.1 GeneID:60411 MGI:1926210
definition	GO_component : GO:0005694 - chromosome [Evidence IEA]; GO:0000775 - chromosome, pericentric region [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; SoxLZ/Sox6 leucine zipper binding protein in testis product : SoxLZ/Sox6 leucine zipper binding protein in testis isoform 1 protein_id : NP_068562.1

name	Cenpk (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30840994 CCDS:CCDS26750.1 GeneID:60411 MGI:1926210
definition	GO_component : GO:0005694 - chromosome [Evidence IEA]; GO:0000775 - chromosome, pericentric region [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; SoxLZ/Sox6 leucine zipper binding protein in testis product : SoxLZ/Sox6 leucine zipper binding protein in testis isoform 2 protein_id : NP_851406.1

name	Adamts6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486614 GeneID:108154 MGI:1347348
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0008233 - peptidase activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0007229 - integrin-mediated signaling pathway [Evidence IEA] codon_start : 1 product : a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 6 protein_id : NP_001074489.1

name	Sdccag10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625681 CCDS:CCDS26752.1 GeneID:67285 MGI:1914535
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0016853 - isomerase activity [Evidence IEA] codon_start : 1 product : serologically defined colon cancer antigen 10 protein_id : NP_080348.1

name	3110031B13Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:66955868 CCDS:CCDS26753.1 GeneID:67288 MGI:1914538
definition	GO_function : GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : hypothetical protein LOC67288 protein_id : NP_080351.2

name	A930021C24Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037509 CCDS:CCDS26754.1 GeneID:77803 MGI:1925053
definition	codon_start : 1 product : hypothetical protein LOC77803 protein_id : NP_084260.1

name	EG238836 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51767903 GeneID:238836 MGI:3645099
definition	codon_start : 1 product : hypothetical protein protein_id : XP_138832.2

name	Rgs7bp (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:119360350 GeneID:52882 MGI:106334
definition	codon_start : 1 product : R7 binding protein protein_id : NP_084155.2

name	4933425L06Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385218 CCDS:CCDS26755.1 GeneID:66763 MGI:1914013
definition	GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0009166 - nucleotide catabolism [Evidence IEA] codon_start : 1 product : hypothetical protein LOC66763 protein_id : NP_080027.1

name	LOC100040646 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149264682 GeneID:100040646
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475812.1

name	LOC100040656 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149264684 GeneID:100040656
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475829.1

name	Rnf180 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625861 GeneID:71816 MGI:1919066
definition	GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : ring finger protein 180 protein_id : NP_082210.1

name	Htr1a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542972 CCDS:CCDS26756.1 GeneID:15550 MGI:96273
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : G-protein coupled receptor 18; 5-HT1A receptor product : 5-hydroxytryptamine (serotonin) receptor 1A protein_id : NP_032334.2

name	LOC667518 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149264677 GeneID:667518
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 330 ESTs, 6 Proteins product : similar to ribosomal protein L32 pseudo : _no_value transcript_id : XR_032338.1

clone name	MSMg01-522K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-206L01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-391J07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-111L13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-048J05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-334J20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-237K21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-384B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-368K13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-260M16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-399J02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-090O07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-232L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-166M19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-400J03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-304F10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-095D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-448L08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-347J23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-364J15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-111A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-414L22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-064E17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-112A12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-279H22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-269M04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-445H11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-365F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-339C10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-443H12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-417C13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-156P01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-261H14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-416J20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-102G19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-063E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-121F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-518E13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-062G17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-047B02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-459P09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-214J11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-176I24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-432J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403B17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-347M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-502J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-548F12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-091K07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-094L17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-365K07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-147D07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-343M07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-363L20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-525E13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-112O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-344G15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-091N01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-535G03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-262N10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-169B20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-511C17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-425G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-214O11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-385N04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-212L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080F08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-075H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-178F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-360C12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-318P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-362D02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-488P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-072J17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-433I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-527C02
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-114M11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-319I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-261H21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-548K11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-417I03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-366K12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-529F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-131D04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-531E20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-139P08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-266H12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-504G16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-422F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-386M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-337A24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-382C17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-430K05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-132H15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-548N07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-044F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251G14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118I15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-343O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151M11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-066E05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-030M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093A11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-017P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-209O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062M15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-010K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033H06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-282K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206G14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079H24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-239P24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-105C13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-055B13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-303E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214N21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076M18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-320A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196N21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-248N16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087H16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-173B24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172L12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-008L20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-233P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030B20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-185D12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-130F02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-044D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040C04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-286M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274L18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-094N24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319I07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-172O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292M07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168E11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-186O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102O23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211H16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103G18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-100D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-108O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175N02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-110B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262K07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-126K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274G03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-062G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237P20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-069P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192P03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-284M17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-300N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038J04
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-365K07.T7 (MSMg01no365_k07.b1)	MSMg01-365K07.TJ (MSMg01no365_k07.g1)
ACC	AG473550	AG473551
length	748	727
length of high quality (start - end)	363 (65 - 427)	497 (58 - 554)
definition	CHROMAT_FILE: MSMg01no365_k07.b1 PHD_FILE: MSMg01no365_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:12 2005	CHROMAT_FILE: MSMg01no365_k07.g1 PHD_FILE: MSMg01no365_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:12 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT CAACTCTTCTCTAGAAATGCAGTCCTATCCATTCTACACGTTCAGTTTCC ATCTGCCTGGTCATTTGTAGTCAATGATAATATTAACCACTAAGCACTTT ACCTAATAACGTATTTAATGTTTATACACTGTCCCACGAGGTCAGAACCT GCTATATTAATTTACAGATGAGGGAATCTAGTCTTAGGCTGTTTATTGAA GCTAAAGAGATGGCACAGCCAACAACAGCACTTGCTGCAGTTGCTGAGAA CCAAAATTCAGTTCTCATAACTCATGTAGCTCGTAACTGCCTGCAACTCC AATTCTAGGAGATCCAATACCCTCCTCTGCCTCTACCATTACCACGCATG CACATAGCATGAACACACATGTGCAGACTGACATCAGTACATACAAAAAA TACATTTTTAAAGGTTATTTTCCTTGCACTCAGTCCATTAATATGGACTA ATTTTGCCAACTTTTTTACTAGTATCTCTGTGTTCATATTCCAACACAAA CCCGATATTTCATATATATTTGCTATTTTGACCGATTTACCACTTACTTC CCCACAAAGAACCTTCCAAGTTTTCTATGAGTTTTATTATATGCTCCTAA ATTTAATCACCTTTCTGTTTCTCCACTTTTTTTCTTCGTTTCCCGATTTT ATATCCGTATTTTTTCCTTCTTCTTATTTTCCAAATCCTTTTTACCCC	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXAGACAATGAAAGAGAAATTTTAGTTTGGAATGGTTTATATAAG ATTCCAGTAGATATTTGTATGCTAGGGATAATCATCATAGACTGCTATGA TTCAGTAGGACTGGATGTGAGTGCAAAGGAAAGTTTTCCTTCTACACAGT GATGTGATGCACAGATAAAGGGAAGAAAAGAACTTCCTAATACCGTTGTT AGTATTTTGATGTATGTTATTTCCAGGTTTTTGTATGTACATATGGCCAT GAATATGTAATGAAATGTTATAGTCCTTATATGTTATGGTCAGTTCTTAG TATATTTTGAACATTATCTTTGATGACATTTTGTAGTTATGTCATTGTTT ATTTAAATTGAATTACAGTATTGTACAACCCTTGTTTTGTTTACGCTCTT GCTCTCCTGTGATACCACCATACTAAACAGTTTTGCCACTAAAACTATGT TGTTCATAGTTATACCCTCTGCAACATAAGGATGAATACAATTTCCAGCC AAGTAAGAAAATATTTTAGAATTGTGGCACATTGTCCAATTGTTCCCCAG TGGTTGCAACCCCAACATGTGCTATGTACTGACAGGAAAAGCTTAACTTA GGAAGTTCATACCCGTATTTGGTTTGAAAAAAACGGGGGCCTTCCTGTCG TTTCCAAAGGTTCTTTTTTCAAAAGCT
quality values	Open. Hide. 7 7 8 15 25 59 21 19 6 6 6 11 19 10 10 10 19 19 37 37 34 25 19 20 16 14 9 9 9 10 10 9 10 9 11 11 16 16 22 25 25 31 30 47 44 29 23 23 28 29 27 30 18 21 11 12 9 9 8 8 8 11 9 13 13 27 27 33 32 32 33 42 42 57 59 59 59 50 50 40 40 42 47 57 50 50 54 50 50 53 42 42 42 37 37 42 46 42 41 41 41 41 48 57 68 68 68 68 68 50 50 47 48 48 51 59 59 57 57 57 57 68 57 57 57 57 57 57 57 68 68 68 68 68 57 57 48 48 48 50 44 44 35 35 35 50 50 57 57 57 57 57 57 57 52 52 57 57 57 57 68 68 68 68 68 57 57 57 57 52 57 57 59 59 68 68 68 68 68 44 59 52 52 52 57 57 52 52 52 57 57 68 68 59 57 57 52 50 52 57 52 54 57 57 57 57 57 57 57 52 52 57 57 57 52 52 52 57 50 50 35 35 35 50 50 50 50 50 50 43 59 59 59 44 44 33 33 44 42 47 48 48 48 57 57 57 57 42 37 30 42 44 57 57 57 57 59 54 54 54 57 44 37 30 30 32 32 32 20 20 20 36 41 46 46 43 43 43 47 59 59 48 57 54 59 59 59 48 48 43 47 43 47 47 40 40 28 28 30 39 41 47 48 48 48 48 48 43 40 40 23 23 15 20 15 13 13 12 18 12 28 28 41 43 48 39 39 30 30 39 59 59 59 48 48 48 59 47 43 48 43 40 33 28 30 30 43 31 40 28 40 40 54 57 57 57 48 43 43 46 46 37 44 37 37 39 47 43 46 48 57 59 59 59 59 59 59 42 37 37 59 48 57 57 44 43 43 43 57 57 57 57 42 42 33 35 42 59 44 43 29 29 29 32 32 20 20 27 34 42 57 48 59 42 30 24 13 13 13 19 32 33 30 24 12 11 11 11 11 12 32 24 27 22 15 11 11 12 19 27 30 32 37 32 21 21 13 12 14 18 30 37 33 28 28 37 37 39 39 39 32 29 28 25 25 25 29 29 39 59 47 47 41 39 37 37 28 28 24 25 15 12 12 19 21 23 28 24 24 19 11 11 11 23 21 17 17 28 30 20 24 27 24 22 20 19 13 11 11 11 23 21 28 28 30 22 23 23 17 15 11 11 11 12 16 15 14 9 9 9 9 15 17 11 10 9 10 8 8 8 8 9 9 11 11 12 12 9 8 8 8 8 8 11 11 11 19 17 17 10 10 13 10 10 9 8 8 10 15 17 10 15 8 8 6 6 8 8 10 11 12 12 12 10 8 8 8 8 8 9 8 8 10 10 9 9 10 15 12 14 16 12 8 8 8 8 8 10 10 9 10 8 8 8 12 9 9 9 9 10 10 10 10 9 10 10 10 11 8 8 6 8 10 8 9 9 11 10 15 11 11 11 10 8 6 6 10 8 8 8 10 10 12 12 8 8 8 8 6 7 13 15 13 7 6 8 8 10 12 11 9 10 10 9 11 14 13 11 11 11 17 17 12 10 10 8 8 8 8 8 19 23 23 11 11 8 10 10 8 6 6 6 8 8 8 6 6 6 6 10 10 12 11 16 10 10 10 11 11 19 10 12 10 10 8 10 9 12 13 15 11 13 10 8 8 8 10 12 10 21 15 15 11 13 13 17 10 10	Open. Hide. 30 37 37 37 37 32 29 29 37 27 25 15 9 9 9 12 12 12 15 13 12 15 15 29 22 43 43 43 44 48 36 36 36 36 37 37 47 27 23 12 9 12 11 15 12 16 18 26 27 48 48 42 42 42 48 42 41 47 50 41 43 47 50 51 68 68 68 68 68 68 68 51 50 50 50 50 48 68 68 68 68 68 68 68 42 42 46 46 41 57 57 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 51 51 50 51 50 50 50 50 50 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 57 57 57 57 57 68 68 68 68 68 68 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 59 68 68 68 68 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 43 43 21 19 23 23 43 31 31 35 44 44 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 44 44 35 31 31 43 43 57 57 59 59 59 57 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 57 57 57 57 57 57 59 68 68 68 68 68 59 59 59 57 57 57 57 57 68 68 68 59 59 59 57 57 57 57 68 57 68 57 57 57 57 57 57 57 57 57 57 57 57 59 59 59 59 59 57 48 48 48 48 54 54 54 54 57 57 57 57 48 48 48 46 43 46 46 43 47 43 48 48 48 40 42 36 36 36 43 43 48 48 32 34 20 31 31 43 43 43 59 59 48 48 48 48 39 39 39 39 37 37 30 27 25 32 37 30 26 26 27 27 15 17 15 26 26 39 39 30 33 23 30 19 20 19 23 18 23 23 18 15 16 16 18 18 25 27 21 16 16 10 10 10 18 15 15 11 10 10 14 13 13 11 13 11 15 9 9 9 9 14 13 13 10 10 11 16 17 25 21 10 8 8 6 6 7 11 19 13 16 11 11 10 8 8 8 8 8 13 18 11 11 11 11 9 8 8 8 8 8 10 10 11 11 10 10 8 8 8 8 8 10 8 11 11 11 11 9 9 9 10 16 11 11 11 10 10 10 10 9 9 9 10 10 9 10 8 8 8 8 8 8 6 6 7 6 8 8 8 8 9 10 10 16 16 12 9 8 9 8 9 9 13 13 10 19 10 8 8 8 8 8 8 10 11 6 6 6 6 6 6 7 10 7 10 10 10 12 13 15 11 11 9 10 10 10 8 8 8 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no365_k07.g1 MSMg01no365_k07.g1 CHROMAT_FILE:
MSMg01no365_k07.g1 PHD_FILE: MSMg01no365_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:12 2005
         (497 letters)



>mm_chr13_105253399_105254295
          Length = 897

 Score =  961 bits (497), Expect = 0.0
 Identities = 497/497 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agacaatgaaagagaaattttagtttggaatggtttatataagattccagtagatatttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agacaatgaaagagaaattttagtttggaatggtttatataagattccagtagatatttg 260

                                                                       
Query: 61  tatgctagggataatcatcatagactgctatgattcagtaggactggatgtgagtgcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatgctagggataatcatcatagactgctatgattcagtaggactggatgtgagtgcaaa 320

                                                                       
Query: 121 ggaaagttttccttctacacagtgatgtgatgcacagataaagggaagaaaagaacttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaaagttttccttctacacagtgatgtgatgcacagataaagggaagaaaagaacttcc 380

                                                                       
Query: 181 taataccgttgttagtattttgatgtatgttatttccaggtttttgtatgtacatatggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taataccgttgttagtattttgatgtatgttatttccaggtttttgtatgtacatatggc 440

                                                                       
Query: 241 catgaatatgtaatgaaatgttatagtccttatatgttatggtcagttcttagtatattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catgaatatgtaatgaaatgttatagtccttatatgttatggtcagttcttagtatattt 500

                                                                       
Query: 301 tgaacattatctttgatgacattttgtagttatgtcattgtttatttaaattgaattaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaacattatctttgatgacattttgtagttatgtcattgtttatttaaattgaattaca 560

                                                                       
Query: 361 gtattgtacaacccttgttttgtttacgctcttgctctcctgtgataccaccatactaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtattgtacaacccttgttttgtttacgctcttgctctcctgtgataccaccatactaaa 620

                                                                       
Query: 421 cagttttgccactaaaactatgttgttcatagttataccctctgcaacataaggatgaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagttttgccactaaaactatgttgttcatagttataccctctgcaacataaggatgaat 680

                            
Query: 481 acaatttccagccaagt 497
           |||||||||||||||||
Sbjct: 681 acaatttccagccaagt 697


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information