BAC Information

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BAC

Clone NameMSMg01-365L23
Chromosome13 (Build37)
Map Location 13,669,087 - 13,669,638
singlet/doubletsinglet
Overlap genenone
Upstream geneEro1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1
Downstream geneLyst, LOC100039831, Gng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2, Tbce, Ggps1, LOC100040243, Arid4b, LOC100039916, Hecw1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365L23.T7 (MSMg01no365_l23.b1)MSMg01-365L23.TJ (MSMg01no365_l23.g1)
ACCAG473629AG473630
length779755
length of high quality
(start - end)		556 (38 - 593)503 (57 - 559)
definitionCHROMAT_FILE: MSMg01no365_l23.b1 PHD_FILE: MSMg01no365_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:20 2005CHROMAT_FILE: MSMg01no365_l23.g1 PHD_FILE: MSMg01no365_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCT
TGGAGTCACTTTAGATAATTAAAGTACCACATGAATCCTGCAAAGGATGC
CTGACTCTACCCTGCAGCGAAAGTATGTTTTCCACTGAAGTCGCAAACTG
GCTGAAATGTAACAGTGCTAATAAGACATGAATCTAAAATTAGATGCTGG
GAAGTGCTGGGAGGAGAAAATGCTCTTGAGAAATCTAGTTAGTAAGTTTT
ATAGTTTTCACTTCCTTGTGATTTGCCTGGGACTCTGGAATCTGGAATTC
CCTGTGTCCTCTCTGCTCTGATCTTTGCTTCAAGTAAATTACTTCACCCT
CTAGGTTAATTTCATCTCCAGCAAAGCATCAGATGCCTCTTTACATTCAG
GAGCACAAAGCAATCCAAATGAAAAATGTCGATGATCCCAAGACAAGTGG
GTCAGCTGAATTAGCACAATGGCCAACAGTGGGACTTTAAGCAGAGCTGA
ATGGCAGACAAGCTGACACACTCCGTCATTCTCCTCTACATAAGAACATT
CTCTGAGAATTAAGTACACTCTGGAGTTAGAGCTCATCTTTAGAGCTGAA
AAACAAAAACCAAACCAAACCAAACCAAACAAACACCCCATGTTTAAATT
CCAAGAACAGTAAGAGTGATAAGAAAGCTGCTGGGTAAGGTTAAAAGTAC
AAAATGGGAGAACGCCTCCTCCCAGCATTATGATTATACCCGAAAAAAAA
TGGCCCTGGGCTATAAAATTTATTAAACN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXATAACAGAGGGATCTCGAATGGCCTAGAAGCATCTAAAGAAATG
TTCAAAGTACTTAGTAATCAGAGAAATGCAAATCAAAACGACCCTGAGAT
TACACTTTACACCAGTCAGAATGGCTAAGATCAAATCCTCAGGTGACAAC
ACAAGCTGGAGAGGATTTGGAGAAAGAGGAACACTCCTCCATTGCTGGTG
GGATTGCAAGCTGGTACAACCACTCTGAAATCAATCTGGACGTTCCTTAG
AAAATTGGAAATAGATCTACCTGAAGACCCAGCTGTACCACTCTTGGGAA
TATACTCAAAAGATGCCCCACCATGCCACAGGGGCACGTGTTCCACTCTG
TTCATAGTGGCCTTATTTGTGATAGCCAGAAGCTGGAAACAACCTAGATG
TCACACAACAGAAGAATGGATACAGAAAATGTAGTTCATTTATTCAATGG
GATACTACTCAGCTATTAAGAACAAGGACATCTTGAGTTTTGCAGGCAAA
TGAATGGAACTAGAAAATATCATCCTGAGTGAGGTAACTCAGACCCCAAA
TGACATGCATGGTATATACTCACTAATAAGGGGGATATAGCAAAAACAAT
AACATTAACCCCTTACCCATATATAAAATACAGCCCTAATTTGAAGGGCC
CAGCAAGGAGCCTCCCTCCCCCTTGGGAGAGAAAAAAAAGGATCCTAATG
GGGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_l23.b1 MSMg01no365_l23.b1 CHROMAT_FILE:
MSMg01no365_l23.b1 PHD_FILE: MSMg01no365_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:20 2005
         (556 letters)



>mm_chr13_13668883_13669838
          Length = 956

 Score = 1029 bits (532), Expect = 0.0
 Identities = 547/552 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccttggagtcactttagataattaaagtaccacatgaatcctgcaaaggatgcc 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccttggagtcattttagataattaaagtaccacatgaatcctgcaaaggatgcc 264

                                                                       
Query: 65  tgactctaccctgcagcgaaagtatgttttccactgaagtcgcaaactggctgaaatgta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgactctaccctgcagcgaaagtatgttttccactgaagtcgcaaactggctgaaatgta 324

                                                                       
Query: 125 acagtgctaataagacatgaatctaaaattagatgctgggaagtgctgggaggagaaaat 184
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acagtgctaataacacatgaatctaaaattagatgctgggaagtgctgggaggagaaaat 384

                                                                       
Query: 185 gctcttgagaaatctagttagtaagttttatagttttcacttccttgtgatttgcctggg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gctcttgagaaatctagttagtaagttttatagttttcacttccttgtgatttgcctggg 444

                                                                       
Query: 245 actctggaatctggaattccctgtgtcctctctgctctgatctttgcttcaagtaaatta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 actctggaatctggaattccctgtgtcctctctgctctgatctttgcttcaagtaaatta 504

                                                                       
Query: 305 cttcaccctctaggttaatttcatctccagcaaagcatcagatgcctctttacattcagg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cttcaccctctaggttaatttcatctccagcaaagcatcagatgcctctttacattcagg 564

                                                                       
Query: 365 agcacaaagcaatccaaatgaaaaatgtcgatgatcccaagacaagtgggtcagctgaat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agcacaaagcaatccaaatgaaaaatgtcgatgatcccaagacaagtgggtcagctgaat 624

                                                                       
Query: 425 tagcacaatggccaacagtgggactttaagcagagctgaatggcagacaagctgacacac 484
           |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 625 tagcacaatggccaacagtgggactttaagcagagctgcatggcagacaagccgacacac 684

                                                                       
Query: 485 tccgtcattctcctctacataagaacattctctgagaattaagtacactctggagttaga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tccgtcattctcctctacataagaacattctctgagaattaagtacactctggagttaga 744

                       
Query: 545 gctcatctttag 556
           |||| |||||||
Sbjct: 745 gctcgtctttag 756


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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