BAC Information

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BAC

Clone NameMSMg01-366K05
Chromosome13 (Build37)
Map Location 20,942,362 - 21,121,011
singlet/doubletdoublet
Overlap geneAoah
Upstream geneLOC432730, Elmo1, LOC100040226, LOC665381, LOC665386
Downstream geneOlfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366K05.T7 (MSMg01no366_k05.b1)MSMg01-366K05.TJ (MSMg01no366_k05.g1)
ACCAG474304AG474305
length759769
length of high quality
(start - end)		478 (50 - 527)434 (85 - 518)
definitionCHROMAT_FILE: MSMg01no366_k05.b1 PHD_FILE: MSMg01no366_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:32 2005CHROMAT_FILE: MSMg01no366_k05.g1 PHD_FILE: MSMg01no366_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,942,362 - 20,942,831)(21,120,578 - 21,121,011)
sequence
CTTCTTTCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGA
TCCGCGGAATTCAAAATGTTTTCTGTCTTCAGCTGTCAGATTCACTCCCC
TGCCAGAACACAAGACAAATCATAGTTAGCTGTTGTGGATGATCTGAAGC
AGTCTTATATCCCGTACTTGGGTTAAAACAAAAACATATTCACATAACAT
AACTGAGTTTTTAGAGAAACCAAAATTGTGACTAAATCTTAAGAAGAACA
AATTTAAGTGTATAAGACTATGTATAGCAAAGTAGTTTTTCCTATTGAGT
CCAGTAGACTCTAAATGTTCCTCCCATCTAAACATATTCTTTCTGTTTTT
CCTTTCTCAGGATTTTTGTGGCTTCTCCTGAAAATACTAGCATGTTTTCT
GAGAGGCTAACTCACAGCTCAGGGATTGTGTGCACTATCTTGTTTTCAGG
ACCTTATGTAAGAGGCAGGAGAGAGGAGTGTTGTAGGAAATCACAGTCCA
GGAGATGTACCAGGCGACATTCTAAGACCAGGTTGTGAGAACATCAGAAT
CCATCCTGGGGATTTAACTTTCTCTGAGACAGTTTCTGCTTTCTAATGCC
TGCACGATCCTAATAGCTTTTGCTTTGCTCCCTTTCCTGCCCCATTCCAT
GAATTCTATTTAACGTTGACGTTTCGCGCTTTCTTCCTCGTAATTTTTGT
ATGCCGGTCTTTCTTGCCCATCCCAACGTTCTTTGTTCTCCCCTAATTTC
TTCGACGGG

CATTACCTACAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCTGAATTTGTTTCT
TACATGCATGATGAAAGGCAATGTTCAAGTTCAGTTCAATGACAGAGAAG
ACCTAATATTTTCTCACTGAGATGCTGGCTACTTCTAGTTAAGCTTGTTC
CTATGGTTCCCAGGTAAGCACACCTTTTCTAGGGAGATTACATAAGAGTA
GAAATGGGCCCGGAATGCTCATTCTGCTGTATTAATTTGAGTCTCACATG
AAGACTGTTAGCAGACCTGTTTTTCTTGTGTTACTTTTCATAATTTTCCC
TTTTACCAGATTCCAAGCCCATAAGACTCTTTTGTGGCTGGAAACTGGAA
ACAAGTGGACACAAAGGTTTTTATAATTGTTCTGAATGGAGCATAATCAA
CTCCATTTGAGTAAAGGGGCACTGGACAGACATGTATTTTGGTAATAGGA
GAAATTAATTATGAGAAAATTTAGGGGTGTATAGAGGATATTTGCACATC
TGATCCTCGTCTTGTTATCTTGTTATTTTTTTATGAAGGCTTATCTTTTT
CTATATTTAATTTTCTTTCTTTTCACTTTATTTATTGCTTCCCTAATCCT
CTTGGTATTTCTTTTTTATTGGAATTGGGAAATTAGTACACATCTCTTTA
TTCGTCATTTTATTTTGTTATCCACTTTCCTCCCCCCCTTCTTCTTTTTA
TTTTTCACCTCCCATCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_k05.b1 MSMg01no366_k05.b1 CHROMAT_FILE:
MSMg01no366_k05.b1 PHD_FILE: MSMg01no366_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:32 2005
         (478 letters)



>mm_chr13_20942155_20943032
          Length = 878

 Score =  839 bits (434), Expect = 0.0
 Identities = 461/470 (98%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattcaaaatgttttctgtcttcagctgtcagattcactcccctgccagaacacaagac 67
           |||||||||||||   ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 208 gaattcaaaatgtaaactgtcttcagctgtcagattcacacccctgccagaacacaagac 267

                                                                       
Query: 68  aaatcatagttagctgttgtggatgatctgaagcagtcttatatcccgtacttgggttaa 127
           ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 268 aaatcatagttagctgttgtggacgatctgaagcagtcttatatcctgtacttgggttaa 327

                                                                       
Query: 128 aacaaaaacatattcacataacataactgagtttttagagaaaccaaaattgtgactaaa 187
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aacaaaaacatattcacgtaacataactgagtttttagagaaaccaaaattgtgactaaa 387

                                                                       
Query: 188 tcttaagaagaacaaatttaagtgtataagactatgtatagcaaagtagtttttcctatt 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tcttaagaagaacaaatttaagtgtataagactatgtatagcaaagtagtttttcctatt 447

                                                                       
Query: 248 gagtccagtagactctaaatgttcctcccatctaaacatattctttctgtttttcctttc 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gagtccagtagactctaaatgttcctcccatctaaacatattctttctgtttttcctttc 507

                                                                       
Query: 308 tcaggatttttgtggcttctcctgaaaatactagcatgttttctgagaggctaactcaca 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tcaggatttttgtggcttctcctgaaaatactagcatgttttctgagaggctaactcaca 567

                                                                       
Query: 368 gctcagggattgtgtgcactatcttgttttcaggaccttatgtaagaggcaggagagagg 427
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 568 gctcagggattgtgtgcactatcttgttttcaggaccttatgtaagaggcgggagagagg 627

                                                             
Query: 428 agtgttgtaggaaatcacagtccaggagatgtaccaggcgacattctaag 477
           |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 628 agtgttgtaggaaatcacagtccaggagatgtaccaggtgacattctaag 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no366_k05.g1 MSMg01no366_k05.g1 CHROMAT_FILE:
MSMg01no366_k05.g1 PHD_FILE: MSMg01no366_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:32 2005
         (434 letters)



>mm_chr13_21120378_21121211
          Length = 834

 Score =  770 bits (398), Expect = 0.0
 Identities = 425/434 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctgaatttgtttcttacatgcatgatgaaaggcaatgttcaagttcagttcaatgaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 agctgaatttgtttcttacatgcatgatgaaaggcaatgttcaagttcagttcaatgaca 575

                                                                       
Query: 61  gagaagacctaatattttctcactgagatgctggctacttctagttaagcttgttcctat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 gagaagacctaatattttctcactgagatgctggctacttctagttaagcttgttcctat 515

                                                                       
Query: 121 ggttcccaggtaagcacaccttttctagggagattacataagagtagaaatgggcccgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 514 ggttcccaggtaagcacaccttttctagggagattacataagagtagaaatgggcccaga 455

                                                                       
Query: 181 atgctcattctgctgtattaatttgagtctcacatgaagactgttagcagacctgttttt 240
           |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 acactcattctgctgtattaatttgagtctcacatgaagactgttagcagacctgttttt 395

                                                                       
Query: 241 cttgtgttacttttcataattttcccttttaccagattccaagcccataagactcttttg 300
           ||||||  || ||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 394 cttgtgggacctttcatagttttcccttttactagattccaagcccataagactcttttg 335

                                                                       
Query: 301 tggctggaaactggaaacaagtggacacaaaggtttttataattgttctgaatggagcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tggctggaaactggaaacaagtggacacaaaggtttttataattgttctgaatggagcat 275

                                                                       
Query: 361 aatcaactccatttgagtaaaggggcactggacagacatgtattttggtaataggagaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 274 aatcaactccatttgagtaaaggggcactggacagacatgtattttggtaataggaggaa 215

                         
Query: 421 ttaattatgagaaa 434
           ||||||||||||||
Sbjct: 214 ttaattatgagaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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