BAC Information

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BAC

Clone NameMSMg01-367L15
Chromosome13 (Build37)
Map Location 46,296,961 - 46,479,912
singlet/doubletdoublet
Overlap geneGm1574
Upstream geneLOC100039533, Mylip, Gmpr, Atxn1, 5033430I15Rik, ENSMUSG00000062282
Downstream geneRbm24, Cap2, C78339, Nup153, Kif13a, LOC544928, Nhlrc1, Tpmt, Aof1, Dek, LOC100039761, Ibrdc2
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367L15.T7 (MSMg01no367_l15.b1)MSMg01-367L15.TJ (MSMg01no367_l15.g1)
ACCAG475126AG475127
length776760
length of high quality
(start - end)		450 (49 - 498)378 (57 - 434)
definitionCHROMAT_FILE: MSMg01no367_l15.b1 PHD_FILE: MSMg01no367_l15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:58 2005CHROMAT_FILE: MSMg01no367_l15.g1 PHD_FILE: MSMg01no367_l15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,296,961 - 46,297,406)(46,479,535 - 46,479,912)
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCTGTCTTGCCAATTACATATTCTAGAAGGATCTAACTGAGG
ACTCATCAGCTCAACCGTTGCAGGCCTCCCATCTGTCATCCAGAAGCAGC
CATCTACCTGAAGGTGACAAGGGAACAAGGAGCCAGACTGCTGGGCATCA
ACCATCAGGAACCTCTGAGAGACCATTTGCACCAGGACAGCTTTTCAGTC
CTGGAATGAAAGTAGGTGCCATTAATTGGGTCGCAATCAGTGTGTCCCAC
TCACTCTCCTGATTATTTATTTTTCATAAACCCCGGAAACTCCAAACTAA
GGATTTCAGGGAGTGAACTGATGCTTTCGTTGGTATAGAATGGTATAGCC
TGATACCCAAAGTTTCAGAGAGTACACGCATGCTGCTGGAAACAATGAAG
ACCAAGTCAGTCCTCATGAAATCAGCCTGGGTGGTTGTGAGGCAACAGAG
GAGATCTGCTAATACATAATAAGAAGTGATCTCCAGAGTGATGGGAGAGG
ACTATGTTGACTGTGCTGAACCTTTCCTTTTCCAGCATTTATTAGTTCCA
TATATAAATATCCCCAGTTGGGAAAAGGCTTTTTTCAAATATAACAAAGA
ATAACTTCCCATGAGAGACCCCCCTCTTAATTTTGTAGGGCGCATTTTTT
TTTATTCCCAATTTTTTCATGTCCCCGGCAATACCCTTATTTTCTTTTTT
CCTTAGAGCGGTATTCTTTCACCCTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXAGGGCAACATAGGACTTGGGTTTTCACATCAGGATTCCACTTGT
AGAGGCTGGGCAAGTGGAGAATAAGGAGTGGTATTTGGAATGTGTTCTAC
ATTTGGCTTAGAAAATAGATATTGTTTCCTAGGGGTCAAAGAGACACTGA
AAATTCTTGAACTGGAGCCATCTTTGAAGGGAACTTGCCCAAGGCAGAGA
TCTGCCATGTTGGGGTAACCCAGCAGTGAAGGGTTTGCCACACTGCTCCA
GTCTTCAGGTGTGGGCAGGTTTCAGGACTTAATCTGTGTATTACCTCTGT
CCAAACTACCATGTAGAGTCTCGTTGGAGGGCTGACAAACCCAAATTGTT
CCCAAGTCAAATAAGCAGCACTTTGCACCAAGAATTCTAGAAAGCCACGA
CAAGACCAGAATCTATCAACAAAGTAGGACATTTCTTTCAGGCCTTTCTC
ATTTTTCAGATAGCACTAGTTTCCCCTACCACCACCCCCATCCCCATTCT
GATGATCCAGGAATTACTTTAGTGTAAGAGTAGGCCTAAGTGTATGGGTC
TTATTTGCGCCATTTGTGGCTTTTAGACGCCTTCTTCTCATTGTTTCTTT
TGTTACTCGATCACCCCAGCCTTGTTGCTACTTCTACCTGCTTTTCTCTT
TTGTTTTTTCCTTTCCTTTCTTTCGATTGTTCCCTCTTTCTCTCCTACTC
TTTAGCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_l15.b1 MSMg01no367_l15.b1 CHROMAT_FILE:
MSMg01no367_l15.b1 PHD_FILE: MSMg01no367_l15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:58 2005
         (450 letters)



>mm_chr13_46296757_46297606
          Length = 850

 Score =  847 bits (438), Expect = 0.0
 Identities = 444/446 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctgtcttgccaattacatattctagaaggatctaactgaggactcatcagctc 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 205 gaattctctgtcttgccaattacatattctagaaggatctaactgaggactcgtcagctc 264

                                                                       
Query: 65  aaccgttgcaggcctcccatctgtcatccagaagcagccatctacctgaaggtgacaagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaccgttgcaggcctcccatctgtcatccagaagcagccatctacctgaaggtgacaagg 324

                                                                       
Query: 125 gaacaaggagccagactgctgggcatcaaccatcaggaacctctgagagaccatttgcac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaacaaggagccagactgctgggcatcaaccatcaggaacctctgagagaccatttgcac 384

                                                                       
Query: 185 caggacagcttttcagtcctggaatgaaagtaggtgccattaattgggtcgcaatcagtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caggacagcttttcagtcctggaatgaaagtaggtgccattaattgggtcgcaatcagtg 444

                                                                       
Query: 245 tgtcccactcactctcctgattatttatttttcataaaccccggaaactccaaactaagg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtcccactcactctcctgattatttatttttcataaaccccggaaactccaaactaagg 504

                                                                       
Query: 305 atttcagggagtgaactgatgctttcgttggtatagaatggtatagcctgatacccaaag 364
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 505 atttcagggagtgaactgatgctttcgttggtatagaatagtatagcctgatacccaaag 564

                                                                       
Query: 365 tttcagagagtacacgcatgctgctggaaacaatgaagaccaagtcagtcctcatgaaat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttcagagagtacacgcatgctgctggaaacaatgaagaccaagtcagtcctcatgaaat 624

                                     
Query: 425 cagcctgggtggttgtgaggcaacag 450
           ||||||||||||||||||||||||||
Sbjct: 625 cagcctgggtggttgtgaggcaacag 650


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no367_l15.g1 MSMg01no367_l15.g1 CHROMAT_FILE:
MSMg01no367_l15.g1 PHD_FILE: MSMg01no367_l15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:58 2005
         (378 letters)



>mm_chr13_46479335_46480112
          Length = 778

 Score =  654 bits (338), Expect = 0.0
 Identities = 368/378 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agggcaacataggacttgggttttcacatcaggattccacttgtagaggctgggcaagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 578 agggcaacataggacttgggttttcacatcaggattccacttgtagaggctgggcaagta 519

                                                                       
Query: 61  gagaataaggagtggtatttggaatgtgttctacatttggcttagaaaatagatattgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gagaataaggagtggtatttggaatgtgttctacatttggcttagaaaatagatattgtt 459

                                                                       
Query: 121 tcctaggggtcaaagagacactgaaaattcttgaactggagccatctttgaagggaactt 180
           ||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 458 tcctaggggccgaagagacactgaaaattcttgaattggagccatctttgaagggaactt 399

                                                                       
Query: 181 gcccaaggcagagatctgccatgttggggtaacccagcagtgaagggtttgccacactgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gcccaaggcagagatctgccatgttggggtaacccagcagtgaagggtttgccacactgc 339

                                                                       
Query: 241 tccagtcttcaggtgtgggcaggtttcaggacttaatctgtgtattacctctgtccaaac 300
           ||||| |  |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tccaggcagcaggtgagggcaggtttcaggacttaatctgtgtattacctctgtccaaac 279

                                                                       
Query: 301 taccatgtagagtctcgttggagggctgacaaacccaaattgttcccaagtcaaataagc 360
           |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 278 taccatgtagagtctcgttggagggctgacaaacacaaatttttcccaagtcaaataagc 219

                             
Query: 361 agcactttgcaccaagaa 378
           ||||||||||||||||||
Sbjct: 218 agcactttgcaccaagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space:   283761
Effective search space used:   283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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