BAC Information

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BAC

Clone NameMSMg01-367P10
Chromosome13 (Build37)
Map Location 25,707,173 - 25,707,324
singlet/doubletsinglet
Overlap genenone
Upstream gene6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1, Tpi-rs8, LOC214973
Downstream geneLOC666221, LOC100042180
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367P10.T7 (MSMg01no367_p10.b1)MSMg01-367P10.TJ (MSMg01no367_p10.g1)
ACCAG475305AG475306
length777728
length of high quality
(start - end)
150 (217 - 366)475 (58 - 532)
definitionCHROMAT_FILE: MSMg01no367_p10.b1 PHD_FILE: MSMg01no367_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:16 2005CHROMAT_FILE: MSMg01no367_p10.g1 PHD_FILE: MSMg01no367_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTCAAGGATCACTTAAAGGACTCATAATTAATATTTGTGTTCAC
ATATGTCTACTATGTATCATATTTAAGGACAGAAGACTCGTTTTTACCAT
GTCTTGAATCCTTTCAGCTACTTTAAAAATAGGTGTTCCCAATTTAGAAC
TGGCAAATAGAGAATAGGAGAATCAAGAGACCTGTCAAAAAACCCCAAAC
CAACAAAATTAGACAGAAAATCCAAATTTTGTGTTTAAAGTCCAAAGTGA
ATAATATAATAAAACATTTATTATTACATATCAGTGTGCGTGTGTGTATG
TGTCTTTGTGAATGTGAGTGTGTGTGTACATATGTGTGGGCTGGGATTTC
ACAGTGCACATATGGAGGGCATATGAAAACTTACAGAAGTCAATTTTTTT
TCTTTTCCCTTGTAGGTCAAAGGTATGGAACTCGGCGTGGCAGGTTTGTT
GGTAGTCCTCTTTACCTATCACCCATACCGAAGTTCGTAGAATCAATATA
CCTAACTTGTGTATTACCGAATCCTTTTCACTATTAGTATGACTATTTGT
CCTGATTATTTCTCGAGCATATGACCACCCCCCTGCTGTTGTATCTCTTT
ACGATTGTACTTTGATGCGCTCTTATTCCCCTTCCCATTTTATCGTCCTT
GCATCATACACTGCCTCCCAATTTTTTCATTCCCGCTCCTCCCATCCTCT
TATCTCTTCTACTTCCCCCTTTTTATT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTGTTTAGCTCTGGTTATTTGAATTTCTAGAGTTCAGCTTCT
TGAGCTCTTTGTATATATTGGATATTAGTCCCCTATCAGATTTAGGATTG
GTAAAAATTCTTTTCCAATCTGTTGGTGGCCTTTTTGTTTTATTGACAGT
ATCTTTTGCCCTACAGAAGCTTTGCAATTTTATGAGGTCCTATAAAATAC
CTTGGTGAGACTCTAACTAAGGGAGTGAAAGATCTGTATGACAAGAACTT
CAAGTCTCTGAAGAAAGAAATTGAAGAAGATCTCAGAAGATGGAAAGATC
TCCCATGCTCATGGATTGGCAGGATTAAATGATAGATAAAATGGCTATCT
TGCTGAAAGCAAACTACAGATTCAATGCATCCCCATATAAATTCCAACTC
AATTCTTCACTGAGTTAGAAAGGGCAATTTGCAAATTCAACTGGAATAAC
AAAAAACCTAGGATAGCAAAAACTCTTCTCAACAATAAAAGAACCTCTGG
GGGAATCACTATGCCTGACCTCAAGCTGTACTACAGAGCAATTATGATAA
AAACTACATGGTACTGATACAGTGACAGAAAGGTAGATCAATGGAATAGA
ACTGAAGACCCAGAAATGAACCCATATGCCTATGATCACCTGATCTTTGA
CAAGGGAGTTAAAACCATCCAGTGGTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_p10.b1 MSMg01no367_p10.b1 CHROMAT_FILE:
MSMg01no367_p10.b1 PHD_FILE: MSMg01no367_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:16 2005
         (150 letters)



>mm_chr13_25706973_25707524
          Length = 552

 Score =  267 bits (138), Expect = 2e-76
 Identities = 148/152 (97%), Gaps = 2/152 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggagaatcaagagacctgtcaaaaaaccccaaaccaacaaaattagacagaaaatccaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ggagaatcaagagacctgtcaaaaaaccccaaaccaacaaaattagacagaaaatccaaa 293

                                                                       
Query: 61  ttttgtgtttaaagtccaaagtgaataatataataaaacatttattattacatatcagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ttttgtgtttaaagtccaaagtgaataatataataaaacatttattattacatatcagtg 233

                                           
Query: 121 tgcgtgtgtgt--atgtgtctttgtgaatgtg 150
           || ||||||||  ||||||||||||| |||||
Sbjct: 232 tgtgtgtgtgtgtatgtgtctttgtgtatgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 150
Length of database: 552
Length adjustment: 8
Effective length of query: 142
Effective length of database: 544
Effective search space:    77248
Effective search space used:    77248
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)