BAC Information

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BAC

Clone NameMSMg01-368F22
Chromosome13 (Build37)
Map Location 32,830,142 - 32,830,620
singlet/doubletsinglet
Overlap genenone
Upstream geneFoxc1, 4930548F15Rik, Gmds, LOC666212
Downstream geneWrnip1, Serpinb1a, Serpinb1-ps1, Serpinb1c, Serpinb6b, Serpinb9, Serpinb9b, Serpinb1b, LOC628301, Serpinb9c, Serpinb9d, Serpinb9e, Serpinb9f, OTTMUSG00000000724, Serpinb9g, LOC100041370, EG619715, LOC382743, OTTMUSG00000000712, LOC193403
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368F22.T7 (MSMg01no368_f22.b1)MSMg01-368F22.TJ (MSMg01no368_f22.g1)
ACCAG475613AG475614
length755765
length of high quality
(start - end)		483 (45 - 527)491 (69 - 559)
definitionCHROMAT_FILE: MSMg01no368_f22.b1 PHD_FILE: MSMg01no368_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:47 2005CHROMAT_FILE: MSMg01no368_f22.g1 PHD_FILE: MSMg01no368_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTCTTGTATGGCTGCACCAATCTTAATGTTGTTTTCCTCTGAGAA
TCAAGTCTGACAGTCTGTATACCCCCAAATTATTGGAACGTTCTAAGCAT
GATATACCCACCACACATTGTCCTTTCTCAGCTCCTGCTGGGAGTCCTGG
CCATTGTCAGGGTCTGGACACTCAGAGAACCTTATTGATGTTATTCCCAG
TATTTGGTTCTCGGATATAACTTCCTCCGAGGCCAGCAGACAGACAGACC
AGCACAGTGTTGTCAGCCATTTTCCCATTCCTGCTGCCATTCCTGTGAGT
TCGTGTATGTAAGAGATTAGCTGGTGAGATCTTTAAAGATGACGGCAGAA
TTAAAAACGATTCATAAGGCTGTTACAAATATTTGTGTAATTTATTCACA
CTAGTTTATTATATGGATTTACTAGTTCCATGCTCTCAAATTTTAATGTG
CACAGCAATTATCTGAGGACTTGTTGAAATGCAGGTTCTAGGTAGTGGGG
GCTAGGATTCTGCTTGNCTTGTTTCTCTGTTTTCCCTCCCTCCCTCCTTC
CTTCCTTTCTTGTGGTGGNGATAGGACCCGAAGGACGCATGCCAATCCCC
AACGTACTCTTAGCTGCCCTTTACCCTTGTTTGGTTCTAGAAGGTTTAAG
AAAGGATTTCTGCACCCCCCAAACACTTGAATAAAGGTCGCAAAATAAAA
AACCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAATCAATACATTTGGCATCATTTTGTTATTA
TAGGTTGTCTTTGATACTAAAAATTTTGAAGTACAGGGCTTCCTTCTATT
GCTATTATTATAAACAGATCTGAGATGTTTAAGCCTGTGAGTTAAGGGCC
AAATAGGAAATTTATGGCTCTGAGTTTATTGTTAGGGTGTTTTCAGTTAT
TTTAATTAGAAATGGCTAAGAGTAGTTAACAGACAACAGTCTAGATTACT
TCACATAATAGTTGGTTTTCGAAAACATCAGAAGTCCACAGAATGTGACA
TTTAATGTTATTTATTCATTTGTTGTTGAGACCAATCTGCTCCTGACAGC
TTTCCCTGTCTTGGATTCGAAGAAGAAACTGAACATCTTTGAGTTACTCC
AGTTGTGGCAAAATAGCCACTAGGCAAGAATTGCCTCATTCATCTACAGA
CATAATACTGTCCAAAGAAAGGATGCAATTGCAGGTTAGGACAGCTTGAT
TCTGCCGAGACAGAGTAGGCTAGTCCTTAATATTCCTGTTTCTCTAAGTC
TGTAAGATGACCCTGGCAAGTAAGCTGAAGAACGATGCTCCACATGTTGA
AGTAAGGGACTGTCCCGGTGATCAGGGGCCTCTATGGAATGGCTAAATTT
TGGAAACTGGTTTAAGCTTCCCATATATTTCCGGTAAAATCAGCCTTCCT
TGGTTTTTGAGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_f22.b1 MSMg01no368_f22.b1 CHROMAT_FILE:
MSMg01no368_f22.b1 PHD_FILE: MSMg01no368_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:47 2005
         (483 letters)



>mm_chr13_32829985_32830866
          Length = 882

 Score =  835 bits (432), Expect = 0.0
 Identities = 468/480 (97%), Gaps = 1/480 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactcttgtatggctgcaccaatcttaatgttgttttcctctgagaatcaagtc 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 636 ggaattcactcttgcatggctgcaccaatcttaatgttgttttcctctgagaaccaagtc 577

                                                                       
Query: 64  tgacagtctgtatacccccaaattattggaacgttctaagcatgatatacccaccacaca 123
           |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 576 tgacagtctgtata-ccccaaattattggaaagttctaagcatgatatacccaccacaca 518

                                                                       
Query: 124 ttgtcctttctcagctcctgctgggagtcctggccattgtcagggtctggacactcagag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ttgtcctttctcagctcctgctgggagtcctggccattgtcagggtctggacactcagag 458

                                                                       
Query: 184 aaccttattgatgttattcccagtatttggttctcggatataacttcctccgaggccagc 243
           |||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||
Sbjct: 457 aaccttattgatgttattcccagtgtttggttctcggatatgacttcctccaaggccagc 398

                                                                       
Query: 244 agacagacagaccagcacagtgttgtcagccattttcccattcctgctgccattcctgtg 303
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 397 agacagacagaccagcacagtgttttcagccattttcccattcctgctgccattcctgtg 338

                                                                       
Query: 304 agttcgtgtatgtaagagattagctggtgagatctttaaagatgacggcagaattaaaaa 363
           |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 337 agttcgtgtatgtaagagattagctggtgagatctttaaagatgacagcagcattaaaaa 278

                                                                       
Query: 364 cgattcataaggctgttacaaatatttgtgtaatttattcacactagtttattatatgga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 cgattcataaggctgttacaaatatttgtgtaatttattcacactagtttattatatgga 218

                                                                       
Query: 424 tttactagttccatgctctcaaattttaatgtgcacagcaattatctgaggacttgttga 483
           ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 217 tttactagttccatgttctcaaattttaatgtgcacagcaattatctgagaacttgttga 158


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 882
Length adjustment: 10
Effective length of query: 473
Effective length of database: 872
Effective search space:   412456
Effective search space used:   412456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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