BAC Information

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BAC

Clone NameMSMg01-368G09
Chromosome13 (Build37)
Map Location 111,594,118 - 111,774,129
singlet/doubletdoublet
Overlap geneLOC100040614, LOC668159
Upstream genePde4d, LOC100040577, Rab3c, EG432803, 9830130M13Rik, Plk2
Downstream gene4732495G21Rik, LOC100040640, EG621953, Gpbp1, LOC100040666, Mier3, Map3k1, LOC668181
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368G09.T7 (MSMg01no368_g09.b1)MSMg01-368G09.TJ (MSMg01no368_g09.g1)
ACCAG475635AG475636
length744755
length of high quality
(start - end)		561 (38 - 598)507 (75 - 581)
definitionCHROMAT_FILE: MSMg01no368_g09.b1 PHD_FILE: MSMg01no368_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:49 2005CHROMAT_FILE: MSMg01no368_g09.g1 PHD_FILE: MSMg01no368_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,773,573 - 111,774,129)(111,594,118 - 111,594,624)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCC
TATATTCGTGGATGCCAAAAAGAATCTGTGTCTAACTCTTGAACGTTCCC
CCCATCCAAAGCCTCTGTGGCAGTTGTACCTGGCACACCAACTCACCTAC
AGAATGGGAGAAAAATCTCTGTTAACTACACAAATGACTGAGGTGTTTGA
CCCCAATATTCTCTTCTTTAGTGAATAGGGGTAATAGTCTTTCAGAAATG
GATCATTTTTGTAGTGGGTGCACAGTTCACAGTTCTTTGTATGACCATGC
CAACAAAACTACTCCCCCATGTAAGGTCTGGGGAACATTGTGGAAGAGAG
GTAGAAAGACTTAAAGAACCCAGGGGTCACGAAGTTTCAGATGAGATTGT
GTCTCCAAGGAATGTAGGAAATTATAACCACATTTATAAAGCATGCCTCA
GTTCGGGTTTCTCTTGCTGTGAAGAGACACCATGACCAAGGCAACTCTTC
TAAAGGAAAACATTTAACTGGGACTGGCTTACAGTTTCAGAGGTTTAGTC
CATTATGATCATGGCAAGGCACATGACAGTATGTAGGCAGATATAATGCT
GGAGATAATGCTGAGAGATCTACATAGTCATTCACAGTCAACAGAAGGAG
ACTGTGAGCTACAGTAAGCATGGCTTGAGCATATGAGACCTCAAAGTCTT
GCCTCACAGTGAAATGCTTTCTCCAAACAAGCTTACACCTTCTT

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTACAGGTGAGGTGTGAGTACTATA
CACAAGAGAACATCGTCCATTTAACACCTGGTTTCTAGGGTCTACCATTG
TTTACTTTATAAATCAGGGCAAGAACTCAGGTACTTAGTCAGTTATTCTA
TTTCTTGTAAAATGGATCAAAGCCTTTAAGGCTGAGTGTAAGGTTGACTG
CTCTGTCTTATTGTCTTATTGCTCTGACACAGAATATGTCTGCTGAGTTC
CTCTCTGAGACGATAGTCTTAGTAACAATAACAATTGTATATTTAATATT
GTTTTTCCACTTAGATTCTGATATTTCAGGTGGACTTTGGTTGCTATTAA
TTTACACAGCTCTTCAAACATCATTCAAATCTTCACTGTGGGGAATAATA
GAGAATTAAAAACTTCATTCTCCTGAAACAGGCTTCCCAGTTCATTTGTT
TTAAGGATGTTACAGACTCTTAGATCTACAGGAATAAAGTGTACTTTATG
TTTGAGTTGATGGATTTGACTAGGAGAAATTTTCCCTAAGGAAAATAGTT
ATCACAGAGGCTACAACTCAAATACAGTCACTCCAGGGAAGCCAAAAGAA
CTGTGTATAGACTCCTAGCTGGACTTAATTAATTTGCTGCTTGGGCACCT
GTAAATTGGAAAAAAAACTCTGAGTTTAAAAGGAAAACCTCATTTTTACA
GCACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_g09.b1 MSMg01no368_g09.b1 CHROMAT_FILE:
MSMg01no368_g09.b1 PHD_FILE: MSMg01no368_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:49 2005
         (561 letters)



>mm_chr13_111773513_111774473
          Length = 961

 Score = 1046 bits (541), Expect = 0.0
 Identities = 553/557 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcctatattcgtggatgccaaaaagaatctgtgtctaactcttgaacgttcccc 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gaattctcctatattagtggatgccaaaaagaatctgtgtctaactcttgaacgttcccc 558

                                                                       
Query: 65  ccatccaaagcctctgtggcagttgtacctggcacaccaactcacctacagaatgggaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ccatccaaagcctctgtggcagttgtacctggcacaccaactcacctacagaatgggaga 498

                                                                       
Query: 125 aaaatctctgttaactacacaaatgactgaggtgtttgaccccaatattctcttctttag 184
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 497 aaaatctctgttaactacacaaatgactgaggtgtttgatcccaatattctcttctttag 438

                                                                       
Query: 185 tgaataggggtaatagtctttcagaaatggatcatttttgtagtgggtgcacagttcaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tgaataggggtaatagtctttcagaaatggatcatttttgtagtgggtgcacagttcaca 378

                                                                       
Query: 245 gttctttgtatgaccatgccaacaaaactactcccccatgtaaggtctggggaacattgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gttctttgtatgaccatgccaacaaaactactcccccatgtaaggtctggggaacattgt 318

                                                                       
Query: 305 ggaagagaggtagaaagacttaaagaacccaggggtcacgaagtttcagatgagattgtg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ggaagagaggtagaaagacttaaagaacccaggggtcacgaagtttcagatgagattgtg 258

                                                                       
Query: 365 tctccaaggaatgtaggaaattataaccacatttataaagcatgcctcagttcgggtttc 424
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 257 tctccaaggaatgtaggaaattataaccacatttataaaccatgcctcagttcgggtttc 198

                                                                       
Query: 425 tcttgctgtgaagagacaccatgaccaaggcaactcttctaaaggaaaacatttaactgg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tcttgctgtgaagagacaccatgaccaaggcaactcttctaaaggaaaacatttaactgg 138

                                                                       
Query: 485 gactggcttacagtttcagaggtttagtccattatgatcatggcaaggcacatgacagta 544
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 gactggctttcagtttcagaggtttagtccattatgatcatggcaaggcacatgacagta 78

                            
Query: 545 tgtaggcagatataatg 561
           |||||||||||||||||
Sbjct: 77  tgtaggcagatataatg 61


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space:   524001
Effective search space used:   524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no368_g09.g1 MSMg01no368_g09.g1 CHROMAT_FILE:
MSMg01no368_g09.g1 PHD_FILE: MSMg01no368_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:50 2005
         (507 letters)



>mm_chr13_111593918_111594824
          Length = 907

 Score =  888 bits (459), Expect = 0.0
 Identities = 495/507 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctacaggtgaggtgtgagtactatacacaagagaacatcgtccatttaacacctggttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 tctacaggtgaggtgtgagtactatacacaagagaacatcgtccatttaacacctggtta 260

                                                                       
Query: 61  ctagggtctaccattgtttactttataaatcagggcaagaactcaggtacttagtcagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctagggtctaccattgtttactttataaatcagggcaagaactcaggtacttagtcagtt 320

                                                                       
Query: 121 attctatttcttgtaaaatggatcaaagcctttaaggctgagtgtaaggttgactgctct 180
           |||||||||||||||||||| ||||||| ||||||||| ||||||||||||| |||||||
Sbjct: 321 attctatttcttgtaaaatgaatcaaagactttaaggccgagtgtaaggttggctgctct 380

                                                                       
Query: 181 gtcttattgtcttattgctctgacacagaatatgtctgctgagttcctctctgagacgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcttattgtcttattgctctgacacagaatatgtctgctgagttcctctctgagacgat 440

                                                                       
Query: 241 agtcttagtaacaataacaattgtatatttaatattgtttttccacttagattctgatat 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 agtcttagtaacaataacaattgtatatttaatattgttattccacttagattctgatat 500

                                                                       
Query: 301 ttcaggtggactttggttgctattaatttacacagctcttcaaacatcattcaaatcttc 360
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccaggtggactttggttgctattaatttacacagctcttcaaacatcattcaaatcttc 560

                                                                       
Query: 361 actgtggggaataatagagaattaaaaacttcattctcctgaaacaggcttcccagttca 420
           | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtgtggggaataataaagaattaaaaacttcattctcctgaaacaggcttcccagttca 620

                                                                       
Query: 421 tttgttttaaggatgttacagactcttagatctacaggaataaagtgtactttatgtttg 480
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 621 tttgttttaaggatgttacagactcttagatctacaggaatacggtgtactttatgtttg 680

                                      
Query: 481 agttgatggatttgactaggagaaatt 507
           ||||||||||||||||||| |||||||
Sbjct: 681 agttgatggatttgactagaagaaatt 707


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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