BAC Information

Click to search

BAC

Clone NameMSMg01-368P06
Chromosome13 (Build37)
Map Location 14,194,640 - 14,195,002
singlet/doubletsinglet
Overlap geneArid4b
Upstream geneLOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1, Lyst, LOC100039831, Gng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2, Tbce, Ggps1, LOC100040243
Downstream geneLOC100039916, Hecw1, Mrpl32, Psma2, AW209491, EG665099
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368P06.T7 (MSMg01no368_p06.b1)MSMg01-368P06.TJ (MSMg01no368_p06.g1)
ACCAG476057AG476058
length759729
length of high quality
(start - end)
368 (41 - 408)339 (64 - 402)
definitionCHROMAT_FILE: MSMg01no368_p06.b1 PHD_FILE: MSMg01no368_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:32 2005CHROMAT_FILE: MSMg01no368_p06.g1 PHD_FILE: MSMg01no368_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TGTTGCTGACAACTAATTTAAGACCTTGAGATAACCTCAGGACTTGGTGC
TCCTTAGTGTGTGGTGTGAGTTAGAATTCTCTGGAGGGCTTATTAAAGAA
GTAATTGTTATTTTTTTCCTTCAGTTTCCAAATCAGGGCATAGAGTTGAG
CTGAGCATTTTTATTTTTAACAAATTTCTATGTAATACTTGTGCTTTTGG
CCTGGAGAGCCCACTCTAGGAACCACTTTGTGGTCTATAAACACAGACTC
ATGTAACAGTTACACATCCTGTAATCCCACAACACAGGAATGCCTAATTC
AGTATTTTGAAAGTGAACAAGCAGTTAAACTACTGTTAACTAAAGAGTAA
CAGGAGCTCCCCCCGCAAAAATGAAAGTGAGTGTACTGCAGACTTAGCAG
CTAGTTTGAAGAAGAAAGCATGTGAATTCCTGTGACTCTGCTAGCTCTCA
GCCTCCTTTTGTATGTGTCCTGTTCTTTCTCTGGACCTGGTAGAAATTCA
CAGTCTCCTGTGCTTTTTTAGTGATGATTCTTCCCCTTGCGTTAGACTTT
TCATCTTTTGCCTCAGTCCGTCTCAGTAGACTTCTATGGGCTTGATAAGG
TAATCTAGATCCACTTAATGTATTCCTTAATTGGGCAATGATTATTTCCC
TAGTGGAATTTTACTTCCTGTAATTCGGTTTGTTATTATGCCCACTGTTT
TGTTGCGTG
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTTTTAATGGGGTTAT
TTGAATTTCTGGAGTCCAGCTTCTTGAGCTCTTTGTATATATTGGATATT
AGTCTCCTATCAGATTTAAGATTAGTAAAAATTCTTTCCCAATCTGTTGG
TGGCCCTTTTGTCTTATTGACAGTATCTTTTGCCTTACAGGAGCTTTCAA
TTTTATGAGGTCCCATTTGTCAATTCTTGATCCTACAGCACAGGCCATTG
CTCTTCTATTTATTAATTTTTTCCGTGTGCCCATATCTTTGAGGTTTTTC
CCCACTTTCTCCTCTATTAATTTCAGTGTCTCTAGTTTTATGTGGAGTTC
TTCCCCCCTCTTANACTTGAGCTTTGTACAAGGAGATAAGAATGGATCAA
TTCACTTTCTTCTACATGAAAGTTGTGCCAGCACCATTTGTTGAAAAGCT
GTCTTTTTTCCGCTGGATGGTTTTAGCTCCCTTGTCTTAGATCTTGTGAC
CATAGGTGAGTGGATTTCACTTCTGGTTTCTCTATTCCTATTCTATTGTT
TAACCTGTCTGTTATTTGTCCTCTAACTTGGGTGTTCTTTATTACAATTT
CTTCTGTATTAACAGCTTTATGTTTCCGTATTGGTGTATTACCCCTTCTA
CTTTCTTTCTTTGGTTTGACTATTATACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_p06.b1 MSMg01no368_p06.b1 CHROMAT_FILE:
MSMg01no368_p06.b1 PHD_FILE: MSMg01no368_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:32 2005
         (368 letters)



>mm_chr13_14194436_14195202
          Length = 767

 Score =  675 bits (349), Expect = 0.0
 Identities = 361/365 (98%), Gaps = 2/365 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgttgctgacaactaatttaagaccttgagataacctcaggacttggtgctcc 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattctgttgctgagaactaatttaagaccttgagataacctcaggacttggtgctcc 264

                                                                       
Query: 64  ttagtgtgtggtgtgagttagaattctctggagggcttattaaagaagtaattgttattt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttagtgtgtggtgtgagttagaattctctggagggcttattaaagaagtaattgttattt 324

                                                                       
Query: 124 ttttccttcagtttccaaatcagggcatagagttgagctgagcatttttatttttaacaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttttccttcagtttccaaatcagggcatagagttgagctgagcatttttatttttaacaa 384

                                                                       
Query: 184 atttctatgtaatacttgtgcttttggcctggagagcccactctaggaaccactttgtgg 243
           |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 385 atttctatgtaatacttgtgcttttggcctggagagtc-actctaggaaccactttgtgg 443

                                                                       
Query: 244 tctataaacacagactcatgtaacagttacacatcctgtaatcccacaacacaggaatgc 303
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tctataaacacagactcatg-aacagttacacatcctgtaatcccacaacacaggaatgc 502

                                                                       
Query: 304 ctaattcagtattttgaaagtgaacaagcagttaaactactgttaactaaagagtaacag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ctaattcagtattttgaaagtgaacaagcagttaaactactgttaactaaagagtaacag 562

                
Query: 364 gagct 368
           |||||
Sbjct: 563 gagct 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 767
Length adjustment: 9
Effective length of query: 359
Effective length of database: 758
Effective search space:   272122
Effective search space used:   272122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)