BAC Information

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BAC

Clone NameMSMg01-370B20
Chromosome13 (Build37)
Map Location 91,502,158 - 91,502,355
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC624190, EG435376, Rps23, Atg10, LOC100042959
Downstream geneSsbp2, LOC666889, Acot12, Zcchc9, Ckmt2, Rasgrf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370B20.T7 (MSMg01no370_b20.b1)MSMg01-370B20.TJ (MSMg01no370_b20.g1)
ACCAG476938AG476939
length849775
length of high quality
(start - end)
202 (41 - 242)351 (68 - 418)
definitionCHROMAT_FILE: MSMg01no370_b20.b1 PHD_FILE: MSMg01no370_b20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:03 2005CHROMAT_FILE: MSMg01no370_b20.g1 PHD_FILE: MSMg01no370_b20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCTGTCATTCACTGTGATAAAAGACATGATCCTGAAGAAGTGGACATGAT
TTTATGCACATAAACTTCCTGCTTTTTCTGCAGTAGTATAAGCATTGCTA
AAGAACATGATCTGATGAGATTACTCAACGGGTAAAAGTGCTACCTAGTG
CAAGACTGGGGTCCTGAGTGTAATCCTGGGGGTGGGGGTGGGGNNNCNNN
NTTNNNTNNTTNNNCTTTTTTTTCTTTCTTCTTTCCTCTCCTTCCTTTCC
CCTCTTCCCCCTTTTTTTTTTCCTCCCTTCTCTTCTTTTCTCTTTACCCT
TCTCCCCCTTCTCTTCTTCTTCCCCTCTTCCTCCCCCTTTTTCCTTTTCC
CCCCNCCCCCCCCNCTTCCTTCCTCTTTCCCTTTTCCTTTCTTCTTCTTT
CTCCTTTTCCCTTTCTCTTTTTCCCNTTTTCTCCCTCTCTCTTTTTTTTT
CTCCCTTTTTCCCCCTTTCTCTTTCCCCTTCCTCCCTTTTTCTTTCTTCT
TTTTTTCCTGTCTTCCTCTTCGGCGTCGGTTTTTCTCCGTCTTCCTCTAC
TCCTCTTTTTTTCTTTTCCACTCCTTTTACCCTTCCTTCACTTTCCTCCT
CTTTCCTTCTCTTTTCTATCCTCCCTTCCCTATAATATCCTCAACCCTTA
TCTTCTCCCCCGCTTTTTATCCCCTCTTATTTAATCCTCCTTCGCTATTC
CTTTCTTTAATTCTTTCCCTCTTTTAACTTTGTTCACCACTATATACTCT
CCTCTTTACTCCTACCGCGCTTTTTACGCTGCCCTATCTATCGCCTCTG
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTACACAGAGAAACCCTGT
CTCAAAAAAAAAAAAAAAAAAAAAGAAGTGAACAGTTAACACTGCAACTT
TTCCTCATATAGAGATGATGCTCTAGTGTCTTGATTGTTATTTTCACAGA
GGAAGCTGAGGCAGGAGGATTATGAGCTTAAGGCCAGCCTGGTTTAGTGA
AACAGTGTCTCAAAAAAAAAAGTTTTTCTTCATTATTAAAATTGTGGCAT
GTACAAAACTCTATAAAAACTTTTTCTCTTCATTTCCAAATACGAATGCT
GTTCATTAATGTGTATGCATGAATTTTACATATGTGTGGATGTACATATA
TATGTATATATACATGTGTGTATGGNATGTGGAGGTTTGAANTTTGAGTT
AAAAAATTTCTTTAAATATAATCTTCCTCCGGATCACCGGATTCAAAACT
TCGCGACAACACCACACCCCCTTTAGTCTCCCTGCCTTGGTTGTCCCCGT
CCTTTTGTGTAACCCCCTAATTCTTTTTCCTTCTTCTCTCCCTTTTCCTG
CGTTATCTATGGCTACCCATCATCTTTCTCGCACCGCTCTTTTTCTCCCC
TCCCCCTTACCTCCTCGCTTTTTTTTTTTCACTTTTCTCCTTTTCCTCTC
CCTTCCTCTTTCCCCCCTTTCTCCCCTTCTTCTCTCTTTTTCTTTCCCTT
CTTTTTTTATTTCTTTTTCCTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_b20.b1 MSMg01no370_b20.b1 CHROMAT_FILE:
MSMg01no370_b20.b1 PHD_FILE: MSMg01no370_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:03 2005
         (202 letters)



>mm_chr13_91501954_91502555
          Length = 602

 Score =  383 bits (198), Expect = e-111
 Identities = 198/198 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgtcattcactgtgataaaagacatgatcctgaagaagtggacatgatttta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gaattctctgtcattcactgtgataaaagacatgatcctgaagaagtggacatgatttta 343

                                                                       
Query: 65  tgcacataaacttcctgctttttctgcagtagtataagcattgctaaagaacatgatctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tgcacataaacttcctgctttttctgcagtagtataagcattgctaaagaacatgatctg 283

                                                                       
Query: 125 atgagattactcaacgggtaaaagtgctacctagtgcaagactggggtcctgagtgtaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 atgagattactcaacgggtaaaagtgctacctagtgcaagactggggtcctgagtgtaat 223

                             
Query: 185 cctgggggtgggggtggg 202
           ||||||||||||||||||
Sbjct: 222 cctgggggtgggggtggg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 602
Length adjustment: 8
Effective length of query: 194
Effective length of database: 594
Effective search space:   115236
Effective search space used:   115236
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)