BAC Information

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BAC

Clone NameMSMg01-371P08
Chromosome13 (Build37)
Map Location 17,584,648 - 17,585,076
singlet/doubletsinglet
Overlap gene5033411D12Rik
Upstream geneLOC665191
Downstream gene2810021B07Rik, Cdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik, Pou6f2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371P08.T7 (MSMg01no371_p08.b1)MSMg01-371P08.TJ (MSMg01no371_p08.g1)
ACCAG478337AG478338
length750757
length of high quality
(start - end)
419 (81 - 499)429 (98 - 526)
definitionCHROMAT_FILE: MSMg01no371_p08.b1 PHD_FILE: MSMg01no371_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:36 2005CHROMAT_FILE: MSMg01no371_p08.g1 PHD_FILE: MSMg01no371_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTCCATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGCTCTGTTCCCA
AGTTTTTAATAGGGTTATTTAGTTCTCTGGAGTCTAATTTCTTGCGTTCT
TTGTATATATTGGATATTAGTCCTCAATTGGATGTAGGATTTAAAGATCT
TTTCCTAATCTGTTGGTTGCCATTTCGTCTTATTGACAGTGTCCTTTGCC
TTGCAGAAGCTTTGTAATTTTATGAGGTCCCATTTGTCTATTCTTGATCT
TAGAGCATAAGCCATTGGTGTTCTGTCCAGGAAATTTTCCCCTGTGCCCA
TGTATTTGGGATTCTTCACCAATTTGTCTTTCATTAGCTTCAGTGTATCT
GGTTTTATGTGGCGGTCCTTGATCCACTTGGATTTGAGATTTGTATAGGG
AGATAAGAATGGCTCAATTTGCATTCTGCTACATGTTGACTACCAATTGA
ACCAGCACCATTTGTTGAAAATGCTGTCTTTTTTTCCACTGGATGGGTTT
AACTTCTTTGTCAAAATGAAGTGGCCATAGGTGTTTGGGTCCATTTTTTG
GGTCTTTTTTCCCTTTTCCCTTGATCCACCTTGTTTTTATTTGATTCTAT
AAAATGTATTTTCTATCTACAATTTGTCCCCTTTTTTCCCCTGTAGTCTT
TGCCCTTCGTTCTTCACTATTCTTTTTTCTCTTTTCTCTTCATACTTCCG

GTTGATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCXXXXX
XXXXXXXXXXXXXXCAGAACTACTCAGAGTAACCTTGGTCTCANANAAAA
AAAAAAAAAAAAAAAAGCAGAACAGTGCAAAACAACCCTGCACGTAACAA
CGGCTTTTAAATCAAGCCACTGAAGATAATTTTTATGATCCACCCAGCAG
TTGGTGCAGACATTTCCTGGCCACTGCACACTACTCAGAGAGCTGTGGAA
TGGCTCCCCGTCCAAAGAGAAGACTTGGGAGACTACAGTACATATTTATG
TTCCTTAGTAATGAGTCCTTAAAGTGAGCTCATGGCAGTTTTTAGGGAAA
GTACAACACCAGATGTGGATTAAAACAGGAAATCATGATGTCAGTGATAA
AATGATTCAGCATATCATATAGGTGTTTGTTAGGTCATTACACCTCAAAC
AAAAAGTCATGCAAGGAGTGCAGGAACATAATGCCAAGATTTGACTTAAT
TAGTATAAACAAATGGATAACAAAGAATTCCAAGAATTTACGTATGTTAG
ATAGAGAGAGAGAGATGTTTTATATCCCTGAATCACTTAATTCTGTTTTC
TTTGAAAATTTTCTTTTTTTTAAATTTAGGACTTATTTAATTTAACATTT
TCCATGCGATCCCAAAAGCCCCCCTATTAATTCTCCTTTAGGCATTTTTC
TCTCAACTATTTCCTATTTTTTGTTTCTTGGAGTCTTTCTCAATTCATTC
AAATATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_p08.g1 MSMg01no371_p08.g1 CHROMAT_FILE:
MSMg01no371_p08.g1 PHD_FILE: MSMg01no371_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:36 2005
         (429 letters)



>mm_chr13_17584448_17585276
          Length = 829

 Score =  799 bits (413), Expect = 0.0
 Identities = 425/429 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaaaaaaaaaaaaaaaagcagaacagtgcaaaacaaccctgcacgtaacaacggcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaaaaaaaaaaaaaaaagcagaacagtgcaaaacaaccctgcacgtaacaacggcttt 260

                                                                       
Query: 61  taaatcaagccactgaagataatttttatgatccacccagcagttggtgcagacatttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaatcaagccactgaagataatttttatgatccacccagcagttggtgcagacatttcc 320

                                                                       
Query: 121 tggccactgcacactactcagagagctgtggaatggctccccgtccaaagagaagacttg 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 tggccactgcacactactcagagagctgtggaatggctcccagtccaaagagaagacttg 380

                                                                       
Query: 181 ggagactacagtacatatttatgttccttagtaatgagtccttaaagtgagctcatggca 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 381 ggagactacagtacatatttatgttccttagtaatgagtccttaaagtgatctcatggga 440

                                                                       
Query: 241 gtttttagggaaagtacaacaccagatgtggattaaaacaggaaatcatgatgtcagtga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtttttagggaaagtacaacaccagatgtggattaaaacaggaaatcatgatgtcagtga 500

                                                                       
Query: 301 taaaatgattcagcatatcatataggtgtttgttaggtcattacacctcaaacaaaaagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaaatgattcagcatatcatataggtgtttgttaggtcattacacctcaaacaaaaagt 560

                                                                       
Query: 361 catgcaaggagtgcaggaacataatgccaagatttgacttaattagtataaacaaatgga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 catgcaaggagtgcaggaacataatgccaagatttgacttaattagtataagcaaatgga 620

                    
Query: 421 taacaaaga 429
           |||||||||
Sbjct: 621 taacaaaga 629


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space:   344400
Effective search space used:   344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)