BAC Information

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BAC

Clone NameMSMg01-372F14
Chromosome13 (Build37)
Map Location 23,596,208 - 23,772,882
singlet/doubletdoublet
Overlap geneHist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e
Upstream geneV1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2
Downstream geneHist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372F14.T7 (MSMg01no372_f14.b1)MSMg01-372F14.TJ (MSMg01no372_f14.g1)
ACCAG478633AG478634
length768793
length of high quality
(start - end)		467 (64 - 530)442 (71 - 512)
definitionCHROMAT_FILE: MSMg01no372_f14.b1 PHD_FILE: MSMg01no372_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:04 2005CHROMAT_FILE: MSMg01no372_f14.g1 PHD_FILE: MSMg01no372_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,596,208 - 23,596,674)(23,772,441 - 23,772,882)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACCTTGTGCACTCCACAGACCCACTCAAATAGATCTGAGACATCAATTAA
AAAAGTATAAAAAGACATTCATGAACCGAGACCAGAAGTTTTATAATCTG
GACGGTCGATGGAGGAGCAATAGGACCTGTTAGGCCCAATAAGACTCGGC
TTCAAGCTAAGATGAAGGTGAAGGCAATCGGGCTGGTACCATCTGCCACT
TCTGTTCCCACCGTGTAGTTCCACACTCATAAGGTGTCCCCCACTTCGCT
CGGCTGAGGTGACCTGCGGGTGCTCTACTGTGCCCTACGGATTCCTCAGA
TTCATGTGCCCAAACCTAGATCTTCCGAATGTCACTAGAAGATGATGTCT
TTAAAGAGGTGATAAGGCAAAAAGTGACTGTCATTCTTACATTCTTACAA
GAAGAGTGTGTTAGAACACTGGTCCACTAAAGAAGACCACATAGAGAAGA
TCATTGCCTGCAAGCCAAGGGAAAGAATCCTTAAGGAGAATGTGTGTGTG
TGTGTATACNTACACACCTATATAGTATATATTCCGTAAAAACTGCGTGA
ATATCATCATTCTTATATATAGGATATAAACTTTCTACATAAATATCATC
CCGCATAGTTTTTTAACTTGGATAACAAACAAAAAAAATTTCTGGGGGTA
AATTCCTGCCCCCGCGCGATTCCTTTTGGGGGCCCTTTTACGGGCTGTGT
TTTCCCCCCCCAAAAAGG

CATGTGTTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAATGCATCACAGACTGGGCAAGCGGGAAAG
CATTTTGTTCTAGAGAGTCCGTGTACTACCAGGGAAGGCATCCAGTACAC
ACTAAATGAAAGCTGCCAATACAACCATCTTTTCCAGTAGATCATGCTGT
CTAATGACTCTTAGGGGCAGCTAAGAACAGGCTACCAAGCACAGCATCCC
ACACAGCTCTGTCCCAGCTCATCCCTAATATTCTAGTATGGTTCTTTAAC
TTCTGTTATGCATTGTCACTATTTAAACCTCAGAGTCCTGCTTACTGCTA
GACAGAATTCTCTATAGCACAAAATATCTTAGAGCTTTAGTTGGCTTTCA
GGCCTTGAGCAGAACTTCAGCAATTTTGTCTTAATGGTCTGGGAAAGTCT
TTGTACTGGGGCACACTGATAAAGGTTATCCCTGATAAGGCTAAAGAAGC
TCCATTTTGTGCTAGGCATCCATCAGGGTACCCTCCAGTCATTTGTCTCT
GACTCCCGCGTCTTGGAAGATAAATTTCCCAGAAACCCCCCTCCCTAAAT
AAACCATGAATAACTAACTTGTTTTGAAATGACTAAAACGGGTTTTCTGG
TTTGTTTTCTTCCATCGCCTGTTTTTTCATACCTTCTTAACCCGACCAAC
ACACCAAATTTTTTGAGTCCCTTTTATTCCTTCAACCTTGCCCTACACAA
ACCATATTCCCACCCTCTTTTATTTACCTATCATCCCCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_f14.b1 MSMg01no372_f14.b1 CHROMAT_FILE:
MSMg01no372_f14.b1 PHD_FILE: MSMg01no372_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:04 2005
         (467 letters)



>mm_chr13_23596008_23596874
          Length = 867

 Score =  903 bits (467), Expect = 0.0
 Identities = 467/467 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacagacccactcaaatagatctgagacatcaattaaaaaagtataaaaagacattcatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacagacccactcaaatagatctgagacatcaattaaaaaagtataaaaagacattcatg 260

                                                                       
Query: 61  aaccgagaccagaagttttataatctggacggtcgatggaggagcaataggacctgttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaccgagaccagaagttttataatctggacggtcgatggaggagcaataggacctgttag 320

                                                                       
Query: 121 gcccaataagactcggcttcaagctaagatgaaggtgaaggcaatcgggctggtaccatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcccaataagactcggcttcaagctaagatgaaggtgaaggcaatcgggctggtaccatc 380

                                                                       
Query: 181 tgccacttctgttcccaccgtgtagttccacactcataaggtgtcccccacttcgctcgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgccacttctgttcccaccgtgtagttccacactcataaggtgtcccccacttcgctcgg 440

                                                                       
Query: 241 ctgaggtgacctgcgggtgctctactgtgccctacggattcctcagattcatgtgcccaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgaggtgacctgcgggtgctctactgtgccctacggattcctcagattcatgtgcccaa 500

                                                                       
Query: 301 acctagatcttccgaatgtcactagaagatgatgtctttaaagaggtgataaggcaaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acctagatcttccgaatgtcactagaagatgatgtctttaaagaggtgataaggcaaaaa 560

                                                                       
Query: 361 gtgactgtcattcttacattcttacaagaagagtgtgttagaacactggtccactaaaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgactgtcattcttacattcttacaagaagagtgtgttagaacactggtccactaaaga 620

                                                          
Query: 421 agaccacatagagaagatcattgcctgcaagccaagggaaagaatcc 467
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaccacatagagaagatcattgcctgcaagccaagggaaagaatcc 667


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space:   391649
Effective search space used:   391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no372_f14.g1 MSMg01no372_f14.g1 CHROMAT_FILE:
MSMg01no372_f14.g1 PHD_FILE: MSMg01no372_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:04 2005
         (442 letters)



>mm_chr13_23772241_23773082
          Length = 842

 Score =  839 bits (434), Expect = 0.0
 Identities = 440/442 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgcatcacagactgggcaagcgggaaagcattttgttctagagagtccgtgtactacc 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 642 aatgcatcacagactgggcaagccggaaagcattttgttctagagagtccgtgtactacc 583

                                                                       
Query: 61  agggaaggcatccagtacacactaaatgaaagctgccaatacaaccatcttttccagtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 agggaaggcatccagtacacactaaatgaaagctgccaatacaaccatcttttccagtag 523

                                                                       
Query: 121 atcatgctgtctaatgactcttaggggcagctaagaacaggctaccaagcacagcatccc 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 atcatgctgtttaatgactcttaggggcagctaagaacaggctaccaagcacagcatccc 463

                                                                       
Query: 181 acacagctctgtcccagctcatccctaatattctagtatggttctttaacttctgttatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 acacagctctgtcccagctcatccctaatattctagtatggttctttaacttctgttatg 403

                                                                       
Query: 241 cattgtcactatttaaacctcagagtcctgcttactgctagacagaattctctatagcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 cattgtcactatttaaacctcagagtcctgcttactgctagacagaattctctatagcac 343

                                                                       
Query: 301 aaaatatcttagagctttagttggctttcaggccttgagcagaacttcagcaattttgtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 aaaatatcttagagctttagttggctttcaggccttgagcagaacttcagcaattttgtc 283

                                                                       
Query: 361 ttaatggtctgggaaagtctttgtactggggcacactgataaaggttatccctgataagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ttaatggtctgggaaagtctttgtactggggcacactgataaaggttatccctgataagg 223

                                 
Query: 421 ctaaagaagctccattttgtgc 442
           ||||||||||||||||||||||
Sbjct: 222 ctaaagaagctccattttgtgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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