Query= MSMg01no372_j15.b1 MSMg01no372_j15.b1 CHROMAT_FILE:
MSMg01no372_j15.b1 PHD_FILE: MSMg01no372_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:23 2005
(577 letters)
>mm_chr13_88046536_88047512
Length = 977
Score = 1038 bits (537), Expect = 0.0
Identities = 567/577 (98%)
Strand = Plus / Minus
Query: 1 ctagtaacatatctaagggggaaaatgataaattctgaaaatttatactaattttaattt 60
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 777 ctagtaatatatctaagggggaaaatggtaaattctgaaaatttatactaattttaattt 718
Query: 61 aaagcataaacaaaaaagtaaaaccaggtataagatatctgttcctgtatttctttgaga 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 aaagcataaacacaaaagtaaaaccaggtataagatatctgttcctgtatttctttgaga 658
Query: 121 caaaacctcattccattgcttggtcattgttattaggatgcaatatgtaccctgagagac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 caaaacctcattccattgcttggtcattgttattaggatgcaatatgtaccctgagagac 598
Query: 181 agaaagcctttaccattacccacagttttggactaattttatcttatcttattctattaa 240
|||||||||||||||| |||||||| |||||||||||||||| |||| ||||||||||||
Sbjct: 597 agaaagcctttaccatcacccacagctttggactaattttattttattttattctattaa 538
Query: 241 tatcataaaatttcagccaaaatatatgaaacattaactacttattttgaaaaccaaaaa 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tatcataaaacttcagccaaaatatatgaaacattaactacttattttgaaaaccaaaaa 478
Query: 301 atcaaatttgtattatggtgggataaaaaagttcaagttgaaaacaatgacgtattctgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 atcaaatttgtattatggtgggataaaaaagttcaagttgaaaacaatgacgtattctgt 418
Query: 361 gaagagttcacatttcctcaaattattattctaatatagttttaaaaagtaaggaactaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gaagagttcacatttcctcaaattattattctaatatagttttaaaaagtaaggaactaa 358
Query: 421 tataaaattcaaacaagtaggaatgaaagcataaaaatcagagtctcctagttatgagtg 480
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tataaaattcaaacaactagaaatgaaagcataaaaatcagagtctcctagttatgagtg 298
Query: 481 tcatgaagaatggtgttaattataaatcaggactataaaagacaatagttaaaaataaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tcatgaagaatggtgttaattataaatcaggactataaaagacaatagttaaaaataaga 238
Query: 541 tgtgtaatttatactctctcatctacttttaatgagg 577
|||||||||||||||||||||||||||||||||||||
Sbjct: 237 tgtgtaatttatactctctcatctacttttaatgagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no372_j15.g1 MSMg01no372_j15.g1 CHROMAT_FILE:
MSMg01no372_j15.g1 PHD_FILE: MSMg01no372_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:23 2005
(525 letters)
>mm_chr13_87868104_87869027
Length = 924
Score = 1007 bits (521), Expect = 0.0
Identities = 524/525 (99%), Gaps = 1/525 (0%)
Strand = Plus / Plus
Query: 1 tcattttcaaaatgacatttcattgtgtgcaagatggattccttagctcttaacctctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcattttcaaaatgacatttcattgtgtgcaagatggattccttagctcttaacctctct 260
Query: 61 gtgtgaatctgcatttttatgtgtcaagtaggcataataacacttagtcttctcacaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtgaatctgcatttttatgtgtcaagtaggcataataacacttagtcttctcacaagg 320
Query: 121 gtgttttaaagattaattagttaagtgcctgggagataaaatggctatataaatgctaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgttttaaagattaattagttaagtgcctgggagataaaatggctatataaatgctaaa 380
Query: 181 tattcatattcattaagatactgtcttaaaagaaaataaaaaatcaaactagctccagat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattcatattcattaagatactgtcttaaaagaaaataaaaaatcaaactagctccagat 440
Query: 241 gaagtcacaattaaagtagaaaatatgagcaaactttttttttaaactgtggagcaagat 300
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 gaagtcacaattaaagtagaaaatatgagcaaactttttttt-aaactgtggagcaagat 499
Query: 301 gtccttgggctactctctttgtatttctcattcttcagtctccatttacactctatattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtccttgggctactctctttgtatttctcattcttcagtctccatttacactctatattt 559
Query: 361 cctcccatttgaccacctccccatattgaaacctatgagtatataatgctacttctccct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cctcccatttgaccacctccccatattgaaacctatgagtatataatgctacttctccct 619
Query: 421 ttgtttttagactcctaatagtctttctatgatatgaaaatttacatgaaataatattac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttgtttttagactcctaatagtctttctatgatatgaaaatttacatgaaataatattac 679
Query: 481 cctacaatatttgatatagttaaatggtgctgtttcaggaacttc 525
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cctacaatatttgatatagttaaatggtgctgtttcaggaacttc 724
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 924
Length adjustment: 10
Effective length of query: 515
Effective length of database: 914
Effective search space: 470710
Effective search space used: 470710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
