BAC Information

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BAC

Clone NameMSMg01-372J21
Chromosome13 (Build37)
Map Location 21,362,934 - 21,363,417
singlet/doubletsinglet
Overlap genenone
Upstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27
Downstream geneGpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372J21.T7 (MSMg01no372_j21.b1)MSMg01-372J21.TJ (MSMg01no372_j21.g1)
ACCAG478839AG478840
length768801
length of high quality
(start - end)		493 (38 - 530)262 (76 - 337)
definitionCHROMAT_FILE: MSMg01no372_j21.b1 PHD_FILE: MSMg01no372_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:24 2005CHROMAT_FILE: MSMg01no372_j21.g1 PHD_FILE: MSMg01no372_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAC
AGTTATTACTTGCTTAAGGCCTTTCTCCTTCCTGGCTGCAAACTTGCACA
TTAAGGAAATCCCGTTAGAAACCTATTTACAGCAAAAGGACTTGCAGCCA
CAGAGGCTCCCAACTGCATCTCATCAGATTGTAATTGCATCCAAGGCATC
TCCTGAGCCACCCTAGAATTTTGGGTTGTAATTTGAGAGGCATCTAATGG
GATATACAGCTAGTGCTAAGATACTTGTGTGACTCCCCTGCCTCGCAGAA
GCTCACAGCTGTACTCTAACCCAGCAGTTCTCAGCCTTCCTCATGACGTG
ACCTTTTATTACAGTTTCTCCTGTGGTGACCCCCAGCCATAAAAGTATTT
CCTTTGCTGCTTCATAACTGTCATTTTGCTACTGTTATAATTGTGTGTAT
TTTTGGAGACAGAGGTTTGCCAGCAGGTCTTAATCCAGAGGTTAACAAAC
ACTGACCTAGACCCTTCTATTCTACGATAAGGCCAAGGATCCTGCTTTGT
CTGAGTCAAGGTCAGTAACATATTAATAGTATTCTTCGATGCTGCACGTA
ATGGGTTCAGAGCTGTGCCTGGCTTTGCTTTGCTTCCCCCGACAGATGGT
CTTTGAAACACTATTGTGGGTAACACAAAACCCCCCTATGGTTTGTGGGT
CTCCCGGCAAGGTGGGCCTCCCAGAAAAAAATATTTAAGGTGGTCCACCC
TGGCAACTCTTAAGAAAG

AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXGCATGTGACAAAGCAAGTCCAAGAT
CCAGGCATGGTTGTATCACCTTTAATCTGGACCACACCTTCTGCTGGAGG
CCTGCATAAGGATATTAGAAGAAGGAAGATTCATTCTTCTTTGACTGCTT
GCACTTACTTCCCAGCACATCTGTTGGAACCTACTTCTTCAGGATTCTAG
ATTTTTTTTTATTTTATTTATTTATTTATTTATTTATTTATTTATTTATT
TATTTATTTATTTATTTATTTATTTATTTATTTATTTATTNGNTTTNTNN
TTNNTTTTTTTTTNTTTNTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTNTTTTTTNTTTTTTTNNTTTTTTTTNNTTTTTCTTTTT
TTTTTNTTTTTTTTTTTTNNNNTTTTTTTTTTTTNTTTTTTTTTTCCTTT
TTNTTTTTTTTTTTTTNNTNTTTTTTTTTTTTNNNTTTTTTNTTNTTTTT
TNTTTTTTTTTTTNTTTTNNTTTTTTTTTTTTTNTTTTTTTNTNTTNNTT
NTNTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTNTTTTTTNTTTTTT
TTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTT
TTTNNTCCTCCTTTTTTTTTTTTTTTTTTTCCTCTTTTTTTTTTTTTTTT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_j21.b1 MSMg01no372_j21.b1 CHROMAT_FILE:
MSMg01no372_j21.b1 PHD_FILE: MSMg01no372_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:24 2005
         (493 letters)



>mm_chr13_21362934_21363826
          Length = 893

 Score =  897 bits (464), Expect = 0.0
 Identities = 479/484 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacagttattacttgcttaaggcctttctccttcctggctgcaaacttgcacat 64
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gaattccacagttaacacttgcttaaggcctttctccttcctggctgcaaacttgcacat 425

                                                                       
Query: 65  taaggaaatcccgttagaaacctatttacagcaaaaggacttgcagccacagaggctccc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 taaggaaatcccgttagaaacctatttacagcaaaaggacttgcagccacagaggctccc 365

                                                                       
Query: 125 aactgcatctcatcagattgtaattgcatccaaggcatctcctgagccaccctagaattt 184
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aattgcatctcatcagattgtaattgcatccaaggcatctcctgagccaccctagaattt 305

                                                                       
Query: 185 tgggttgtaatttgagaggcatctaatgggatatacagctagtgctaagatacttgtgtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tgggttgtaatttgagaggcatctaatgggatatacagctagtgctaagatacttgtgtg 245

                                                                       
Query: 245 actcccctgcctcgcagaagctcacagctgtactctaacccagcagttctcagccttcct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 actcccctgcctcgcagaagctcacagctgtactctaacccagcagttctcagccttcct 185

                                                                       
Query: 305 catgacgtgaccttttattacagtttctcctgtggtgacccccagccataaaagtatttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 catgacgtgaccttttattacagtttctcctgtggtgacccccagccataaaagtatttc 125

                                                                       
Query: 365 ctttgctgcttcataactgtcattttgctactgttataattgtgtgtatttttggagaca 424
           |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 124 ctttgctgcttcataactgtcactttgctgctgttataattgtgtgtatttttggagaca 65

                                                                       
Query: 425 gaggtttgccagcaggtcttaatccagaggttaacaaacactgacctagacccttctatt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  gaggtttgccagcaggtcttaatccagaggttaacaaacactgacctagacccttctatt 5

               
Query: 485 ctac 488
           ||||
Sbjct: 4   ctac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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