BAC Information

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BAC

Clone NameMSMg01-373F07
Chromosome13 (Build37)
Map Location 89,487,347 - 89,630,581
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667230, EG435375, Edil3
Downstream geneHapln1, EG667266, Vcan, LOC100042940, Xrcc4, Tmem167, LOC100043170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373F07.T7 (MSMg01no373_f07.b1)MSMg01-373F07.TJ (MSMg01no373_f07.g1)
ACCAG479386AG479387
length732740
length of high quality
(start - end)		579 (15 - 593)473 (57 - 529)
definitionCHROMAT_FILE: MSMg01no373_f07.b1 PHD_FILE: MSMg01no373_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:16 2005CHROMAT_FILE: MSMg01no373_f07.g1 PHD_FILE: MSMg01no373_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,487,347 - 89,487,916)(89,630,136 - 89,630,581)
sequence
CTTCCTATTTCGAGAGGATCCGCGGAATTCAATGTCCTCTTCTGGTGTGT
CTGAAGACAATGATAATGTATTTATATTACAAGAAATAAATTTAAATATC
TTTAAAAACCAACTACAAGAACAACAACTCAGAAATCAGCTCTTCGACTA
GTATTCATCCCACACCTAGATGCCAGTGTAAGAAGACAATCAACAATAGC
TATTGCAATATGGCTCCAGCAGAGTCCAGCTATTCTACTACAACAATTCC
AGAATATTCTGAACAGCTGAAGCAAGAGAAAATGACTTTAAAATCAATTT
TATGAAGATGAAAGAGGTCCTTAAAGAGTAAATGAATACATCCCTTAAAT
AAATCCGAGAAAACAGAAATAAACAATTGGAGAATATATAAGTCTATCTA
TATATATACCTTCTTACATTGCTGAAAACTCCCTGTCTGCTTCCATGTAC
CCATCCCTACTTGCATGGATATTCCTCCTTAGATGCGTATCCCTACTTAG
GTGGATAACTTACAACTTCTGCTCAGGTGCAGGCCACAATAGTCAGAATG
GGTGAGAGCCCCAGCCACCATCTTAATCCTCCTACTTCCCTGGTTCTGGC
CTTAAAGAAAGTCAAGAAGAAACAATCAGGTAAAGGGAATAAAACAAAAT
GTTTCACAAATTGAAATAGAAGCCAGAAAAATACCTTGAGGGGAGGGATC
CTGTAGAAAGAAAACTAGGCAAAGGAGAAGAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCCAGGCATGTCAGAAAACCTCTAAGAAGAACCACACAAAGCCAA
ATATATACTCAGTGTAAAACTGGAGAGAGAGGAACTCATGTGTAGTAAGG
AGAACAAAAACCGCTGAGAGTCAACTATTGTCAAAAAGTCAGGAACAAGA
ATGTACTTTGTTACCAGAAAAGAAAAGGAGAGTGTAAATGGAATACAGCA
AGCAGAGTGACATCAGAATTCTTATACATTCAAAATGTAAAAGGATAGAA
GCGCATTTCCCTGATCACTAAGGATTTTGAACATTTCTTTGAGTGCTTCT
CAGCCATTTAAGATTCCTCTATTGTGAACTGCATATTTAGTTCTTTAGTG
CATTTTTTATTGGCTTGTTTGTTTTTTGAGGGTTAGCTTCTTGAGTTCTT
TTAATATTTTGGGTATTATCTCTCTATCAGATATGGGGTTGGTGAAGATT
TTTTTCCCAGTCTGTGGGTTGCTGATTCGNTCTATTGACTATGGCCTTTG
CCTTACAAAACTTTTTCATTTCATGATGTCCAGTGAATTGCCCAAACTAC
TCTGATATTTCACTTTTTACCCATCTTTATACTTATTATTAAAAACTTTT
GTCGTCCGTCTTTGGTTGGTTTTGAATTGGATAAAAAAGAATTTTTCTCC
TTTTTTCCGCGTGATTGTTTACCTGCATAGTCTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_f07.b1 MSMg01no373_f07.b1 CHROMAT_FILE:
MSMg01no373_f07.b1 PHD_FILE: MSMg01no373_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:16 2005
         (579 letters)



>mm_chr13_89487138_89488116
          Length = 979

 Score = 1064 bits (550), Expect = 0.0
 Identities = 565/570 (99%)
 Strand = Plus / Plus

                                                                       
Query: 10  ggaattcaatgtcctcttctggtgtgtctgaagacaatgataatgtatttatattacaag 69
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ggaattcaatgtcctcttctggtgtgtctgaagacaatgataatgtatttatattacaag 269

                                                                       
Query: 70  aaataaatttaaatatctttaaaaaccaactacaagaacaacaactcagaaatcagctct 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 aaataaatttaaatatctttaaaaaccaactacaagaacaacaactcagaaatcagctct 329

                                                                       
Query: 130 tcgactagtattcatcccacacctagatgccagtgtaagaagacaatcaacaatagctat 189
           | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 330 tagactagtattcatcccacacctagatgccagtgtaagaacacaatcaacaatagctat 389

                                                                       
Query: 190 tgcaatatggctccagcagagtccagctattctactacaacaattccagaatattctgaa 249
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 390 tgcaatatggctccagcagagtccagctattctactacaacaattctagaatattctgaa 449

                                                                       
Query: 250 cagctgaagcaagagaaaatgactttaaaatcaattttatgaagatgaaagaggtcctta 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 cagctgaagcaagagaaaatgactttaaaatcaattttatgaagatgaaagaggtcctta 509

                                                                       
Query: 310 aagagtaaatgaatacatcccttaaataaatccgagaaaacagaaataaacaattggaga 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 aagagtaaatgaatacatcccttaaataaatccgagaaaacagaaataaacaattggaga 569

                                                                       
Query: 370 atatataagtctatctatatatataccttcttacattgctgaaaactccctgtctgcttc 429
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 atatataagtctatctatatatataccttcttacattgctgaaaactccctgtctgcttc 629

                                                                       
Query: 430 catgtacccatccctacttgcatggatattcctccttagatgcgtatccctacttaggtg 489
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 catgtacccatccctacttgcatggatattcctccttagatgcgtatccctacttaggtg 689

                                                                       
Query: 490 gataacttacaacttctgctcaggtgcaggccacaatagtcagaatgggtgagagcccca 549
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 690 gataacttacaacttctgctcaggtgcaggccacaatagtcagaataggtgagagcccca 749

                                         
Query: 550 gccaccatcttaatcctcctacttccctgg 579
            |||||||||||||||||||||||||||||
Sbjct: 750 cccaccatcttaatcctcctacttccctgg 779


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no373_f07.g1 MSMg01no373_f07.g1 CHROMAT_FILE:
MSMg01no373_f07.g1 PHD_FILE: MSMg01no373_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:16 2005
         (473 letters)



>mm_chr13_89630136_89631008
          Length = 873

 Score =  824 bits (426), Expect = 0.0
 Identities = 441/446 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaggcatgtcagaaaacctctaagaagaaccacacaaagccaaatatatactcagtgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ccaggcatgtcagaaaacctctaagaagaaccacacaaagccaaatatatactcagtgta 387

                                                                       
Query: 61  aaactggagagagaggaactcatgtgtagtaaggagaacaaaaaccgctgagagtcaact 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 386 aaactggagagagaggaactcatgtgtagtaaggagaacaaaaaccactgagagtcaact 327

                                                                       
Query: 121 attgtcaaaaagtcaggaacaagaatgtactttgttaccagaaaagaaaaggagagtgta 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 326 attgtcaaaaagtcaggaacaagaatgtactttgttagcagaaaagaaaaggagagtgta 267

                                                                       
Query: 181 aatggaatacagcaagcagagtgacatcagaattcttatacattcaaaatgtaaaaggat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aatggaatacagcaagcagagtgacatcagaattcttatacattcaaaatgtaaaaggat 207

                                                                       
Query: 241 agaagcgcatttccctgatcactaaggattttgaacatttctttgagtgcttctcagcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 agaagcgcatttccctgatcactaaggattttgaacatttctttgagtgcttctcagcca 147

                                                                       
Query: 301 tttaagattcctctattgtgaactgcatatttagttctttagtgcattttttattggctt 360
           ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 146 tttaagattcctctactgtgaactgcatatttagttctttactgcattttttattggctt 87

                                                                       
Query: 361 gtttgttttttgagggttagcttcttgagttcttttaatattttgggtattatctctcta 420
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86  gtttgttttttgaaggttagcttcttgagttcttttaatattttgggtattatctctcta 27

                                     
Query: 421 tcagatatggggttggtgaagatttt 446
           ||||||||||||||||||||||||||
Sbjct: 26  tcagatatggggttggtgaagatttt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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