Query= MSMg01no373_f22.b1 MSMg01no373_f22.b1 CHROMAT_FILE:
MSMg01no373_f22.b1 PHD_FILE: MSMg01no373_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:19 2005
(484 letters)
>mm_chrX_73425293_73426176
Length = 884
Score = 812 bits (420), Expect = 0.0
Identities = 454/484 (93%), Gaps = 30/484 (6%)
Strand = Plus / Minus
Query: 1 gacatagtgaattcaagtctagcatgagctatacactgagaccatgcacataagggtcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gacatagtgaattcaagtctagcatgagctatacactgagaccatgcacataagggtcac 506
Query: 61 ttccctttattaagattctctgtggcatgcagacaaaagccagggcactgcaggaataac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttccctttattaagattctctgtggcatgcagacaaaagccagggcactgcaggaataac 446
Query: 121 agctactttatatcttaatgtgtttgaaaaaatgatgataaaagtttttaccagaatctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agctactttatatcttaatgtgtttgaaaaaatgatgataaaagtttttaccagaatctg 386
Query: 181 atcatgggcgaatccatgcagcaccactgaaaacaatcttattggccatactggtgcatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atcatgggcgaatccatgcagcaccactgaaaacaatcttattggccatactggtgcatg 326
Query: 241 atcactaaactgccaaatgttaggctttgtgtggaaatatgtgacctgacataccatcta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atcactaaactgccaaatgttaggctttgtgtggaaatatgtgacctgacataccatcta 266
Query: 301 cgtctacgtctacgtctacatctatctatctatctatctatctatctatctatctatcta 360
|||||||||||||||||||||||| | |||||
Sbjct: 265 cgtctacgtctacgtctacatcta-----------------------------c-atcta 236
Query: 361 tctatctatctatctatctatctatctctgtgtgtatgtgtatatttatatataatttat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 tctatctatctatctatctatctatctctgtgtgtatgtgtatatttatatataatttat 176
Query: 421 tatatttatgtttattcttcttcttgttcatttagttctctttctatcacataaggctcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 tatatttatgtttattcttcttcttgttcatttagttctctttctatcacataaggctcc 116
Query: 481 ttaa 484
||||
Sbjct: 115 ttaa 112
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 14
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no373_f22.g1 MSMg01no373_f22.g1 CHROMAT_FILE:
MSMg01no373_f22.g1 PHD_FILE: MSMg01no373_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:19 2005
(575 letters)
>mm_chr13_26383246_26384220
Length = 975
Score = 949 bits (491), Expect = 0.0
Identities = 516/529 (97%), Gaps = 8/529 (1%)
Strand = Plus / Minus
Query: 55 gtatctaaataccgttgaagaggtttggggtgacagcagaaagaacattaaataaagaga 114
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975 gtatctaaataccattgaagaggtttggggtgacagcagaaagaacattaaataaagaga 916
Query: 115 caacaggatattttgctttgcctgttacccctctcactcaacaccaaatggtaaagaata 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 caacaggatattttgctttgcctgttacccctctcactcaacaccaaatggtaaagaata 856
Query: 175 ccaaacgctgtccttcctctatgtacaggctcctaagactcccctccattgcttgtccag 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 ccaaacgctgtccttcctctatgtacaggctcctaagactcccctccattgcttgtccag 796
Query: 235 cacatgtcctag--------ctttaaatcttcagcttcctttattcattcagagttgtac 286
|||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 795 cacatgtcctagctctctatctttaaatcttcagcttcttttattcattcagagttgtac 736
Query: 287 ctgtctggcatactgaatttatagtgtatttaacattctgtgcatagcgtttccacttca 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ctgtctggcatactgaatttatagtgtatttaacattctgtgcatagcgtttccacttca 676
Query: 347 gcacaatgggcatttattgggcatcttctgagtgctctgaccctggcctcagagttctcc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 gcacaatgggcatttattgggcatcttctgagtgctctgaccctggcctcagagttctcc 616
Query: 407 ctgttctcttgttgtaaccaacaaacacagtatgaaagcttggattggaatccataaaat 466
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 615 ctgttctcttgttgtaaccaacaaacacagtatgaaagcttggatcggaatccataaaat 556
Query: 467 aaaatatgctgcatttctattttcacagaatttctgttttcattgtttatataaatatca 526
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 555 aaaatatgctgcatttctattttcacagaatttctgttttcattgttaatataaatatca 496
Query: 527 cacattactatgttttctccattcacaaactaaagttttttcccatgaa 575
||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 495 cacattactatgttttctccattcacaaactaaagttgtttcccatgaa 447
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
