BAC Information

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BAC

Clone NameMSMg01-373M21
Chromosome13 (Build37)
Map Location 87,717,846 - 87,718,262
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC675707, LOC667230, EG435375
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373M21.T7 (MSMg01no373_m21.b1)MSMg01-373M21.TJ (MSMg01no373_m21.g1)
ACCAG479748AG479749
length728744
length of high quality
(start - end)		427 (10 - 436)451 (56 - 506)
definitionCHROMAT_FILE: MSMg01no373_m21.b1 PHD_FILE: MSMg01no373_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:50 2005CHROMAT_FILE: MSMg01no373_m21.g1 PHD_FILE: MSMg01no373_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTGTCAGAGGATCCGCGGAATTCTATTTGCTCTCTTTTGTGTGGTAATA
ATGTAATGTATTCCATATTCACTAATATTTCAAAAGACTACTGAATACAT
GTATCTGAATATCTCTTTTTTTGTATTTTATCAGAAATTACAGCATGACT
TTCTAAAGAGACAGTATCAGAGTCTACTACTTTGCTTTTAAGCTGAAAAA
TTTATTTCCATTATGTTACACTTTGTTATTCTTCTCTTGGTACAAGATCT
GCATTAATAAATTTTAATGCTTTTTTTTTTCAGGGAAATAATTGCACCTG
GAAAACTTTTTTTCTCTTTCTCCCATCATTCTAATTAGACTTAAGAAAAT
AAATTCCTTAAATAGTCTTGCATTTAGATGGGGGCTTATTTTCTGTCCTG
ACATACATTTATCTCTTTCTCTTGATTTAAAAGATGTCTTGTTATTTTTG
TCAACAGAATTCGCTTCTCCAAATTTAATCATATATTGCATGTATCTGCC
TTCTAANTAGNATTTTTAATCCCAAGGATACCTACATATGTGGACCTTAC
TTAACAAACCAATTGTGACACCCCATTTTTATCCCAAATAGACAACCTCC
CACAATTAAATTCCGGCGAAAGGATTTTTATTTCCAAAATAAAACATGCG
GGGTTCTAATTGTTCTTGGGCGGCCTGCCCTGGAAAATTGTTAAATGGTT
TTGGAACCCCGCTAAAATTTCCCCCCCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCTGTTTAGCTCTGTTTCCCATTTTTTGATAGGGTTATTTGGTTC
TCTGAAGTCTAATTTCTTAAATTCTTTGTGTATGTTGAATATAAGCCCTC
TATTGGATATAGGGTCGGTAAAATATTTTTCCAATGTGTTCATTTGCTTT
TGTCCTCTTGAAACTGTCTTTGCCTTACAGAAACTTTGTAATTTTATGAG
GTCTCATTTGTCAATTTTTGATCTTAGAGCATAAGCCATTGGTGTTCTAT
TCAGAAAAATTTCTCCTATGCCCATGTGTTTGAATTCGTTTGGAATAACA
TTGAAACCTGAGATAGCAAAAACTATTCACAACAATAAAAGAACATCTGG
GGGAATCACCGTCCCTGACTTTAAGCTGTACTACAGAGCAATAGTGATAA
AAGCTGCATGGTACTGGTACAGAGATAGTAGACAAGTATATCAATGGAAT
AGAATTGAAGACCCAGAAATAAACCACAAATCTATGGTCACTTGATCTTT
GAAAAGGAGCTAAAATCTTCCAGTGGAAAAAAAAGACTGCTTTTTCAAAA
AATGATGCTTGTTCAACTGGGGGTCCCCATGTAAAAAAAATGAAAATGGA
ACCCTTTTATCTCCCTATAAAAACTCCAAGCCCCCGGGGACAAGGGCTTC
CCCTTTAAACCGATAACCTGGATCTTACCAAAAAGAAAATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_m21.b1 MSMg01no373_m21.b1 CHROMAT_FILE:
MSMg01no373_m21.b1 PHD_FILE: MSMg01no373_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:50 2005
         (427 letters)



>mm_chr13_87717637_87718462
          Length = 826

 Score =  762 bits (394), Expect = 0.0
 Identities = 412/418 (98%), Gaps = 1/418 (0%)
 Strand = Plus / Plus

                                                                       
Query: 10  gaattctatttgctctcttttgtgtggtaataatgtaatgtattccatattcactaatat 69
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gaattctatttgctctcttttgtgtggtaataatgtaatgtattccatattcactaatat 269

                                                                       
Query: 70  ttcaaaagactactgaatacatgtatctgaatatctctttttttgtattttatcagaaat 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ttcaaaagactactgaatacatgtatctgaatatctctttttttgtattttatcagaaat 329

                                                                       
Query: 130 tacagcatgactttctaaagagacagtatcagagtctactactttgcttttaagctgaaa 189
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 330 tacagcatgactttctaaagagacagtatcagagtcttctactttgcttttaagctgaaa 389

                                                                       
Query: 190 aatttatttccattatgttacactttgttattcttctcttggtacaagatctgcattaat 249
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 390 aatttatttccattatgttacattttgttattcttctcttggtacaagatctgcattaat 449

                                                                       
Query: 250 aaattttaatgcttttttttttcagggaaataattgcacctggaaaactttttttctctt 309
           |||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 450 aaattttaatacttttttttt-cagggaaataattgcagctggaaaactttttttctctt 508

                                                                       
Query: 310 tctcccatcattctaattagacttaagaaaataaattccttaaatagtcttgcatttaga 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tctcccatcattctaattagacttaagaaaataaattccttaaatagtcttgcatttaga 568

                                                                     
Query: 370 tgggggcttattttctgtcctgacatacatttatctctttctcttgatttaaaagatg 427
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 569 tgggggcttattttctgtcctgacatgcatttatctctttctcttgatttaaaagatg 626


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 826
Length adjustment: 9
Effective length of query: 418
Effective length of database: 817
Effective search space:   341506
Effective search space used:   341506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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