Query= MSMg01no374_b09.b1 MSMg01no374_b09.b1 CHROMAT_FILE:
MSMg01no374_b09.b1 PHD_FILE: MSMg01no374_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:12 2005
(512 letters)
>mm_chr13_18957117_18958027
Length = 911
Score = 882 bits (456), Expect = 0.0
Identities = 492/504 (97%), Gaps = 1/504 (0%)
Strand = Plus / Plus
Query: 9 tcatgctattggcttgatgacgcctgagcagtgggctatgtggtagaaaacactttgaaa 68
||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||
Sbjct: 209 tcatgctattggcttgatgacgcctgagcagtgggctgtgtgttagaaaacacttggaaa 268
Query: 69 tcagtggagggtttttggcctgccttgtgtggcatgattctgttatcctggccagacaaa 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tcagtggagggtttttggcctgccttgtgtggcatgattctgttatcctggccagacaaa 328
Query: 129 gatggctctactgtgatgccccccactgcacccctttttttgcatttgtgtgtacatgtg 188
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 329 gctggctctactgtgatgccccccactgcacccc-ttttttgcatttgtgtgtacatgtg 387
Query: 189 catgtgtttgtacatacatgtagaggtcagatgactacctcagatgtcctttccctggag 248
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 388 catgtgtttgtacatacatgtagaggccagatgactacctcagatgtcctttccctggag 447
Query: 249 atgtccatttgcaagagggtctgctctctgggaccgaggactcagcatgtagtctaggct 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 atgtccatttgcaagagggtctgctctctgggaccgaggactcagcatgtagtctaggct 507
Query: 309 ggctgaccagagcccaaagatccatgactacatgggccagcactgaggttacaagcatgt 368
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 508 ggctgaccagagcccaaggatccatgactacatgggacagcactgaggttacaagcatgt 567
Query: 369 gccaccacatatatttttgtttggtttggttttggttttttggcctttagaccatgggtt 428
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gccaccacatgtatttttgtttggtttggttttggttttttggcctttagaccatgggtt 627
Query: 429 ctggggcttgaactcaggccctcatgcttgtacttcactaactgagcagtctaactgcct 488
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||
Sbjct: 628 ctggggcttgaactcaggccctcatgtttgtacttcactaactgagcggtctaaccgcct 687
Query: 489 cgcttgtgtcctttgagctgcaga 512
||||||||||||||||||||||||
Sbjct: 688 cgcttgtgtcctttgagctgcaga 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 911
Length adjustment: 10
Effective length of query: 502
Effective length of database: 901
Effective search space: 452302
Effective search space used: 452302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no374_b09.g1 MSMg01no374_b09.g1 CHROMAT_FILE:
MSMg01no374_b09.g1 PHD_FILE: MSMg01no374_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:12 2005
(500 letters)
>mm_chr13_19141654_19142544
Length = 891
Score = 826 bits (427), Expect = 0.0
Identities = 479/501 (95%), Gaps = 11/501 (2%)
Strand = Plus / Minus
Query: 1 ttcataggagacatcactgctcctatttgctgttctatcctcatttctcatttcttcttc 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 691 ttcataggagacatcactgctcctatttgctgttctatc-------ctcatttcttcttc 639
Query: 61 atcctagttaatcagcttggaatctgggtcacaaaaactacagttggaaatccaacagac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 atcctagttaatcagcttggaatctgggtcacaaaaactacagttggaaatccaacagac 579
Query: 121 taatagggccatgcaaacaaatccttcatatgcaatctgtttcacacaaaccatctctga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 taatagggccatgcaaacaaatccttcatatgcaatctgtttcacacaaaccatctctga 519
Query: 181 agaaaagagacgtaagatttttgtaaaagtgtggggttggaataaattaactctaaactc 240
||||||||||| ||||||||| | ||||||||||||||||||||||||| |||||||||
Sbjct: 518 agaaaagagac--aagattttttttaaagtgtggggttggaataaattaaatctaaactc 461
Query: 241 caaaccagagttcaaggacagacttcacgctacatttattccaatatagactagtaagga 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 460 caaaccagagttcaaggacagacctcacgctacatttattccaatatagactagtaagga 401
Query: 301 aatcacaagcaaggatgcctattttagaaaagtggaattttaaaacaactaaactttgga 360
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 400 aatcacaagcaaggatgcctattttagaaaagtagaattttaaaacaactaaactttgga 341
Query: 361 gtctcagatgactatagtaaacaaaaattcaattcatagtatactctcaa-tcacttcat 419
|||||| |||||||||||||| |||| |||||||||||||||||| |||| |||||| ||
Sbjct: 340 gtctcatatgactatagtaaa-aaaatttcaattcatagtatactgtcaaatcacttaat 282
Query: 420 tggggattgaaaaacatatttgttgggaaaacttgaactctaagttgtctaggctaaata 479
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 281 tggggattgaaaaacatatttgttgggaaaacatgagctctaagttgtctaggctaaata 222
Query: 480 atacctttgggattctgtttc 500
|||||||||||||||||||||
Sbjct: 221 atacctttgggattctgtttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 891
Length adjustment: 10
Effective length of query: 490
Effective length of database: 881
Effective search space: 431690
Effective search space used: 431690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
