BAC Information

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BAC

Clone NameMSMg01-374E04
Chromosome13 (Build37)
Map Location 11,835,166 - 11,835,501
singlet/doubletsinglet
Overlap geneRyr2
Upstream geneLOC100039648, Zp4
Downstream geneLOC100039678, Mtr, LOC100039826, Actn2, EG432725, Heatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374E04.T7 (MSMg01no374_e04.b1)MSMg01-374E04.TJ (MSMg01no374_e04.g1)
ACCAG480098AG480099
length751737
length of high quality
(start - end)
575 (52 - 626)441 (57 - 497)
definitionCHROMAT_FILE: MSMg01no374_e04.b1 PHD_FILE: MSMg01no374_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:27 2005CHROMAT_FILE: MSMg01no374_e04.g1 PHD_FILE: MSMg01no374_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAAGGCCCCAACCAAACATAGTAAAAGCAATATACAGCAA
ACCAGTAGTCAACATCACACTAAATGGAGAGAAACTTGAAGCAATCCCAC
TAAAATCAGGGACTAGACAAGGCTGCCTACTCTCTCCCTATCTATTCAAT
ATAGTACTAGAAGTTCTAACTAGAGAAATTAGACAACAAAAGGATCAAAG
GGATCTCAAATTGAAAAGGAAGAAGTCAAAATATCACTATTTGCAGATGA
TATGATCATATACTTGTGACCCCAAAAATTACACCAGAGAAGTTCTAAAC
CTGATAAACAACTTCAACAAAGCGACTGGATATAAAATTAACTCAAACAA
ATCAGTAGCCTTCCTATATTCAAAGGATAAACAGGCTGAGAAAGAAATTA
GGGAAACTATACCCTTCATAATAGTCACAAATAATATAAAATACCTTGGG
GTGACTCTAACCAAGCAAGTGAAAGATCTGTATAAGAACTTCAAGTCTCT
GAAGAAAGAAGTCGAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCT
CATGGGTTGGCAGGGTTAATATATTAAAAATGGGCATCTTACAGAAAGCA
ATCTACAGATTCTATGGAATCTCCATCAAATTTCCCAAGCAATTCTTCAT
ATAGTTAGAAAGAGCAATTGGAAATTCTTTTGAATAAACATAAACCCGAA
T
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXAGAAAGCGATGTGGCGTGGCAAGAGGACTGTGTGTGGATGGAGG
TCATTTTCCTTTCCTCTCTCCACTGCTTTGTGAGTTCCTAGGGATCGACC
CCAGCAGGTGAGGTTTCCTTTAGCCTTGCTATCTGTCGTGTCACACTACA
ATCTGAGTGATCCTCACTGCTTAAAGTCACAAGTCAGATCTTAGCATCCC
ATTGCTCAGAGCACTAACATCCATGTCTGAAACATCTGTGATCTCTATCC
CTTCCCTCCTGTCCTGCTTTTCTTTACATTTCCAACAAGATAAGAGAAAG
CTGTAAGAGGCAAGGGCTCTGTTTGGTGTAGTTCATTAACATATCCTCAG
TATCTAAAACAGTGCCTGGGCTCTGTAGTAAATGCCTTTTTCAAGTCATA
AGTGGGAATCAGAAATAGCAGGAAGGAGAACTCCTGTAGAAAGCAGTCCA
GGGCTCTCCAAAGGGCAGGAAAAGCTAAAGCTTGGGCAGAGATGGCAACT
ATGTTGTCATAGGCTCCTATTGGAGGCAAGCNGGCACGTTGTCAGGACCG
TACATTAACTTGACCCTTTTGAACAAAGCAGAATACTTTTCCTTTCTGAA
TCTACAGGAATTTTCGGTTGTAATTCCTTCGTTCTAGGCCTTCTTTATAT
AAAATGATTCCTGCTGTGATTACAGGCCGATTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_e04.g1 MSMg01no374_e04.g1 CHROMAT_FILE:
MSMg01no374_e04.g1 PHD_FILE: MSMg01no374_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:27 2005
         (441 letters)



>mm_chr13_11835166_11836006
          Length = 841

 Score =  650 bits (336), Expect = 0.0
 Identities = 336/336 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaaagcgatgtggcgtggcaagaggactgtgtgtggatggaggtcattttcctttcctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 agaaagcgatgtggcgtggcaagaggactgtgtgtggatggaggtcattttcctttcctc 277

                                                                       
Query: 61  tctccactgctttgtgagttcctagggatcgaccccagcaggtgaggtttcctttagcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tctccactgctttgtgagttcctagggatcgaccccagcaggtgaggtttcctttagcct 217

                                                                       
Query: 121 tgctatctgtcgtgtcacactacaatctgagtgatcctcactgcttaaagtcacaagtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 tgctatctgtcgtgtcacactacaatctgagtgatcctcactgcttaaagtcacaagtca 157

                                                                       
Query: 181 gatcttagcatcccattgctcagagcactaacatccatgtctgaaacatctgtgatctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 gatcttagcatcccattgctcagagcactaacatccatgtctgaaacatctgtgatctct 97

                                                                       
Query: 241 atcccttccctcctgtcctgcttttctttacatttccaacaagataagagaaagctgtaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  atcccttccctcctgtcctgcttttctttacatttccaacaagataagagaaagctgtaa 37

                                               
Query: 301 gaggcaagggctctgtttggtgtagttcattaacat 336
           ||||||||||||||||||||||||||||||||||||
Sbjct: 36  gaggcaagggctctgtttggtgtagttcattaacat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)