NCTTCCTATNNNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCC
AGAGGATCCGCGGAATTCCCAGAAGATTTCATTTATGAGAGTCAAAATTA
GAATCTCAGGTGATTGTCACATCATAAACTGCTACCACCTAAACATTTCT
AAGATGTATGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTNNNNNNN
NNNNNNNNTNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTT
TTTTTTTTTTTTTTTTTTTNTNTNTNNTTNNNTNNTTNTTTCTTTTTTTT
TTTTTTTTTTTTTTTCTTTTNNNNNNTTTTTTTTTTTTTTTTTNNNNNNN
NNNCNNNNNNNNNNNNNNNCCTTCNTCCTTCTTTTTTTCTCCTCCTCCTT
TCTCTTATTCTTCCTTNTTTTCCTTTATTTTCTTTTTTTTTCTTTCTTTT
CTCTCTCTTTCTCCTTTTCTCCCTCACTCCCCTCCCTCCTCTTTCGTTGT
TTCATNGTTNTTTTATCATTCGTCTTCCCCCTTGTTTTTTTTCCTCTTCC
TTTAATTCTTCATCTACCNCACNNNNCTTACTTCTTAATTATTTTTATTC
CCTTTCCTCTTCTTTTCATTACACATTATATTTGTTTCTTTTTATCTTTC
TTTATCTCTTTAA

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTGTGTCTGGTTTTATTGTTACT
ACACTGCAGCATTTAGATGCTGAGGGTGGGAGCTCTGGTGTCCTGGTGCA
TGTGGCTACAACATCCTCCTCCCTCTCCCCTGCACAAAGCAGACCCTGAG
ACTGGAAAAGGAGGGCTATATAACTCATAGAAGTCATTGATTAAAAAAAC
AGGATCAGTGAAATCTCCAGGTGGCCACACCAAGGGTGCAGGAACTGATT
ACAAGTGTTCATTGGGGTTTCTGAAAAGTGGCTTGCAGGTTGAGAGGATT
GGCTGCTCTTCCAGAGGACCCAGGTTTAAATCCTAGCACCCAGATCAGGC
TAATGACTGTCTATAACTGCGGTTTCAGGGGAAACTATATATAGGTATAT
CACATGTTGTATATATTAGAAAATATATATAACATATATTGTATGTTACG
TAATATAATTATTGTATCAAGTATAATCAATATATTACTAACTGTCATTA
ATAGTATTATGATAATTACCTTAATGACAGAAATGATTAACTTTCTTTGA
GACAGAGTGCCTTGTATCCCCCGTTGGTTTTTGAACCCTGAAGGCCCCTA
TATTTCTTTTTATATAACCTTTTTCTGCAGCCCTTCTGGATTTAATACTA
TTCCCCACTAACATATTTTGGAAAAATATCATTACCTTCTACCTTTTAAA
A

Query= MSMg01no376_c11.g1 MSMg01no376_c11.g1 CHROMAT_FILE:
MSMg01no376_c11.g1 PHD_FILE: MSMg01no376_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:59 2005
         (468 letters)



>mm_chr13_48233497_48234364
          Length = 868

 Score =  843 bits (436), Expect = 0.0
 Identities = 442/444 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgtgtctggttttattgttactacactgcagcatttagatgctgagggtgggagctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 actgtgtctggttttattgttactacactgcagcatttagatgctgagggtgggagctct 385

                                                                       
Query: 61  ggtgtcctggtgcatgtggctacaacatcctcctccctctcccctgcacaaagcagaccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggtgtcctggtgcatgtggctacaacatcctcctccctctcccctgcacaaagcagaccc 325

                                                                       
Query: 121 tgagactggaaaaggagggctatataactcatagaagtcattgattaaaaaaacaggatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 324 tgagactggaaaaggagggctatataactcatagaagtcattgattaaaaagacaggatc 265

                                                                       
Query: 181 agtgaaatctccaggtggccacaccaagggtgcaggaactgattacaagtgttcattggg 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 264 agtgaaatctccaggtggccacaccgagggtgcaggaactgattacaagtgttcattggg 205

                                                                       
Query: 241 gtttctgaaaagtggcttgcaggttgagaggattggctgctcttccagaggacccaggtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gtttctgaaaagtggcttgcaggttgagaggattggctgctcttccagaggacccaggtt 145

                                                                       
Query: 301 taaatcctagcacccagatcaggctaatgactgtctataactgcggtttcaggggaaact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 taaatcctagcacccagatcaggctaatgactgtctataactgcggtttcaggggaaact 85

                                                                       
Query: 361 atatataggtatatcacatgttgtatatattagaaaatatatataacatatattgtatgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84  atatataggtatatcacatgttgtatatattagaaaatatatataacatatattgtatgt 25

                                   
Query: 421 tacgtaatataattattgtatcaa 444
           ||||||||||||||||||||||||
Sbjct: 24  tacgtaatataattattgtatcaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)