Query= MSMg01no376_f11.b1 MSMg01no376_f11.b1 CHROMAT_FILE:
MSMg01no376_f11.b1 PHD_FILE: MSMg01no376_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:13 2005
(507 letters)
>mm_chr13_4861568_4862474
Length = 907
Score = 851 bits (440), Expect = 0.0
Identities = 484/503 (96%), Gaps = 8/503 (1%)
Strand = Plus / Plus
Query: 5 gaattctcagtgttacggcatccacaggctcacaggtttgaacactatgtgcccaactac 64
|||||||| ||| || ||||||||||| ||||| | ||||||||||||||||||||||||
Sbjct: 213 gaattctctgtgctatggcatccacagactcac-gttttgaacactatgtgcccaactac 271
Query: 65 tggcactgttttgtaagtttgtatagccttagaaggtgaggcctcactgaagtatgtagg 124
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 272 tggcactgttttgtaagtttgtatagccttagaaggtgaggcctcactgaag-------g 324
Query: 125 ccactggtacagaatcctgatattttacagcttggtctcattcccctttccttccatgat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccactggtacagaatcctgatattttacagcttggtctcattcccctttccttccatgat 384
Query: 185 tcccagcaagatgcagggtaagtagttagttactttcttgttccagcagccatgcggtaa 244
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcccagcaagatgcagagtaagtagttagttactttcttgttccagcagccatgcggtaa 444
Query: 245 ccccctccttctgtgtctccctgccatgaggaaataaactcctcccactgcaaaacagaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccccctccttctgtgtctccctgccatgaggaaataaactcctcccactgcaaaacagaa 504
Query: 305 aagaaaaatcctttgccctttaaacacttttcatcagttagcttgacacagcaagaaatg 364
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 505 aagaaaaatcctttgccctttaaacacctttcatcagttagcttgacacagcaagaaatg 564
Query: 365 ctatctaaccaatgtaatactctgatgatccatatgtatagcaatcattatagggggaag 424
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 565 ctatctaaccaatgtaatactctgatgatccatatgtataacaatcattatagggggaaa 624
Query: 425 ttgtctgttaataaaggaaaatttaaagttttgaggtatctgtggataatcatttgccga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttgtctgttaataaaggaaaatttaaagttttgaggtatctgtggataatcatttgccga 684
Query: 485 agtagaanacgtctatcagagat 507
||||||| |||||||||| ||||
Sbjct: 685 agtagaaaacgtctatcaaagat 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no376_f11.g1 MSMg01no376_f11.g1 CHROMAT_FILE:
MSMg01no376_f11.g1 PHD_FILE: MSMg01no376_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:13 2005
(515 letters)
>mm_chr13_5012657_5013576
Length = 920
Score = 975 bits (504), Expect = 0.0
Identities = 514/520 (98%), Gaps = 5/520 (0%)
Strand = Plus / Minus
Query: 1 atttgggatgtgcctatgaatggccctgtgtggtagcacctgagcatttacaagatgtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 atttgggatgtgcctatgaatggccctgtgtggtagcacctgagcatttacaagatgtgg 661
Query: 61 gctttgggacagtaagagaacc-----tttttttttatagtaacaacaacaacaacaaaa 115
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 660 gctttgggacagtaagagaaccttttttttttttttatagtaacaacaacaacaacaaaa 601
Query: 116 agaatcagccactgaataccttccgtgttcaagcatatgggcaggggaaagttttcatcc 175
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 600 agaatcagccactgaataccttccgtgttcaagcatatggggaggggaaagttttcatcc 541
Query: 176 ttatccccaagtgagaacactgacttcgttgcttttatttgttaccccggtgctatggga 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ttatccccaagtgagaacactgacttcgttgcttttatttgttaccccggtgctatggga 481
Query: 236 gacgggataagaatatcatgagatgtgcttccttccagaaaagcttcagggtagtaagat 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gacgggataagaatatcatgagatgtgcttccttccagaaaagcttcagggtagtaagat 421
Query: 296 accctatctcaagtagataataagattgactaagcagggtaggcagtgtttccctttgtc 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 accctatctcaagtagataataagattgactaagcagggtaggcagtgtttccctttgtc 361
Query: 356 ttctctgcacatatacctgtacacatacttgctgatgcagctcacacatacactacatcg 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ttctctgcacatatacctgtacacatacttgctgatgcagctcacacatacactacatcg 301
Query: 416 gcatatcaaactcacatatccccaaaacagtaattcatatctaaatgcactaaaattaca 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gcatatcaaactcacatatccccaaaacagtaattcatatctaaatgcactaaaattaca 241
Query: 476 ggtctaatattctcaatccataataattgccctaaagcag 515
||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ggtctaatattctcaatccataataattgccctaaagcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 920
Length adjustment: 10
Effective length of query: 505
Effective length of database: 910
Effective search space: 459550
Effective search space used: 459550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
