BAC Information

Click to search

BAC

Clone NameMSMg01-377H22
Chromosome13 (Build37)
Map Location 93,862,012 - 93,862,394
singlet/doubletsinglet
Overlap genenone
Upstream geneRasgrf2, Msh3, Dhfr, 6430502M16Rik, 4930405M20Rik, Zfyve16, LOC100039070, Spz1, Serinc5, Ppia-ps13_1124.1, Thbs4, EG624619, EG218444
Downstream genePapd4, LOC100039163, Homer1, Jmy, EG619883, Bhmt, Bhmt2, Dmgdh, Arsb, Cycs-ps3, Lhfpl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377H22.T7 (MSMg01no377_h22.b1)MSMg01-377H22.TJ (MSMg01no377_h22.g1)
ACCAG482562AG482563
length802797
length of high quality
(start - end)		420 (46 - 465)383 (75 - 457)
definitionCHROMAT_FILE: MSMg01no377_h22.b1 PHD_FILE: MSMg01no377_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:41 2005CHROMAT_FILE: MSMg01no377_h22.g1 PHD_FILE: MSMg01no377_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACACTGGGTGGAACTTAAGCATGGGAGACCTCAAAGACCACCTT
CACAGTGACACACTTCCTCCAACAAGACCACACCTACTAAAAACAAGGCC
AGACCTAATAGTGCCAGTCGCTGTCTGCCAAGTATTCACAGGCACGAGTC
TATGGGGGGGCCATTCCTACTCAAACTACCATAGATAGCAATCAATTAAT
GACCTCCTGGGCAGTTCAAGGTGTCCATTTCTTCTCAGGGCTTTACTTTT
TATCTATGCTTTTGTGTGTATTGGCATATACACGAAGGGGCCTGTGGAGG
TCAGAAGAGGGTGTTAGGTTCCCTGGAGATGGAGCTATATGGAGCTGCCT
GATGTCTTCTGAAAAGGCAGCATCTCTAACCCTTGAGCATCTCTCCAGCC
CCACAGTCTGAAAGTTTTATATGGAAAATTCCAGAAACAAACGGTTGCTG
TAGGCAATTAATCCTGCTCAAATCCCCAAGTGGGAGTGAAGTGAGTTCCT
TGGTATTTGCCCCCACGTTTGGTTCCCCCCCTGGGTACACCCCACCCTTC
AACCAAACAGGCCCTAAATTTTAAATGCGCTTAAAAGCTCCAGGGGGGGG
CCACCCCCAACCTTCCCGGTGTTTAAATTTCCCCCCAAAATCTTGGGTTT
TTCTCTTTAAATCCCTTTCCCGTTTTGTGCGCCTAAAACAAAAAAAAGGC
CCCCCGTGGGTTCTCCTTTTTTTTCCAATAGTGAGAGAGTTCCCCCCTTC
CG

CCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATCCTTGTTCCCCTATGGGTGAGAAA
GTGGGTATGGAAGAAGCCCAAAACATGGCTCCTCTTCATATTACTGAGAG
CCAAAGACGCCAGAAGCCAGAGGTCTCTCCTCCGTCTATGTGGAATATTT
CTGCACGTAAGGAAGAGCCAAGCAGTGATCACAAGGAAACATGGCTCTCG
TCATCTGACGTAGTAGATAGAATGCCACAGAAGCCCAAATCAGCCCAGTC
CGCCTTCACAAGGATGAACTCAGAGGAACCAGCATCAATGATTCTGCCAG
TGGAATCAAAAGGCAGTTTAAGTGATCTTGGTGAAGACAGACTTAGACAA
GAAATGCCAAAACCCACTTCTTTGGAACATTGTGAAGAGGAAGTGGAACG
TCCAACAGAGGAGAAGGATGGCTGGGAAACTAGATCATTTTCCTTGGCAG
GGAAGAGGGGCCTGGCAGAAAAACAAGAAATCATGGCTCCCTTGGAACTC
CGGGAAAAAGAAGAATAAGGAAAGTTGTAAAGGATGGCGGAAACCTCCAC
TTTTTCATTTGGAAAAAAAAAAACCGTTGAGAGGGTTTGAAAGGCATTTT
TCCCCCTGAAAATTCTGGGAAAACCATTTGAAACCTTGTTTGTGATTGTA
TAAAAAAAAGGCTGCTATGGGTTTTTTCTCATAGTAAATAAAAAAACCCC
CCTGCCCCTTTTTTTTCGGGATTACCAAGTTTTCCTTTAAAGATAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_h22.g1 MSMg01no377_h22.g1 CHROMAT_FILE:
MSMg01no377_h22.g1 PHD_FILE: MSMg01no377_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:41 2005
         (383 letters)



>mm_chr13_93861812_93862594
          Length = 783

 Score =  733 bits (379), Expect = 0.0
 Identities = 382/383 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atccttgttcccctatgggtgagaaagtgggtatggaagaagcccaaaacatggctcctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 atccttgttcccctatgggtgagaaagtgggtatggaagaagcccaaaacatggctcctc 524

                                                                       
Query: 61  ttcatattactgagagccaaagacgccagaagccagaggtctctcctccgtctatgtgga 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 523 ttcatattactgagagccaaagacgccagaagccagaggtctcttctccgtctatgtgga 464

                                                                       
Query: 121 atatttctgcacgtaaggaagagccaagcagtgatcacaaggaaacatggctctcgtcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 atatttctgcacgtaaggaagagccaagcagtgatcacaaggaaacatggctctcgtcat 404

                                                                       
Query: 181 ctgacgtagtagatagaatgccacagaagcccaaatcagcccagtccgccttcacaagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ctgacgtagtagatagaatgccacagaagcccaaatcagcccagtccgccttcacaagga 344

                                                                       
Query: 241 tgaactcagaggaaccagcatcaatgattctgccagtggaatcaaaaggcagtttaagtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tgaactcagaggaaccagcatcaatgattctgccagtggaatcaaaaggcagtttaagtg 284

                                                                       
Query: 301 atcttggtgaagacagacttagacaagaaatgccaaaacccacttctttggaacattgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 atcttggtgaagacagacttagacaagaaatgccaaaacccacttctttggaacattgtg 224

                                  
Query: 361 aagaggaagtggaacgtccaaca 383
           |||||||||||||||||||||||
Sbjct: 223 aagaggaagtggaacgtccaaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space:   289476
Effective search space used:   289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |