BAC Information

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BAC

Clone NameMSMg01-378D08
Chromosome13 (Build37)
Map Location 81,745,881 - 81,746,128
singlet/doubletsinglet
Overlap geneGpr98
Upstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984
Downstream geneLysmd3, Polr3g, 2900024O10Rik, Cetn3, LOC238756
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378D08.T7 (MSMg01no378_d08.b1)MSMg01-378D08.TJ (MSMg01no378_d08.g1)
ACCAG483110AG483111
length822764
length of high quality
(start - end)		257 (50 - 306)490 (78 - 567)
definitionCHROMAT_FILE: MSMg01no378_d08.b1 PHD_FILE: MSMg01no378_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:38 2005CHROMAT_FILE: MSMg01no378_d08.g1 PHD_FILE: MSMg01no378_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTGAAGCTCCATTCCCCATGGCCATTCATTCCTATCATCCT
GTGTAAGACAGTAGACTAGGCAGGAACACAGTGAGGCTCAGCACAGTGTC
TGCTGCTAGAGTGGAGGAAAGCCTGTATTCTTAAATCAATCTCCCTCCCT
CCTTCTCTCCTCCCTCTCTCCCTCTCTCCTTCAGGTCCCCCATCTGTGTG
AGTATGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATG
AANNNNNNNNNNNNNNNNNNNTTTTTTTNTNNTTNTTTTTNTTTTTTTTT
TTTTTTTTTTTTTTTTTTNTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTNTTTTNNNCCCNTTNNTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTNTTTNTNTTTTTTTT
TTTTTNNTTTTTTTTTTTTTTTTNTTTTTTTTTTTNTNNTTTNNNTNNTT
TTTNTTTTTTTNTTTTNTTTTTTNTTTTTTTTNTTNTTTTTTTTTTTTTT
TTTTTTTTTTTTTNNTTTTGTTTTTTTTTTTTTTTTTNTTTTTTTTTTTT
TTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTNNTTTTT
TTTTTTNNTTTTTTTTTTTTTTTTTTTTNTTTNNTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTNTTNNNTTTTTTTTTTNTTTNNNNNT
TTTTTTTNTTTTTTTTTTTTTT

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATGTGTGCACACAATGTGTTTT
GATCAAATCCACTTTCTACTCCCTCCATCCCAAATCTTATTTTTCTTATC
ATGTTTCCCTCCCAATTTCATGTAGGGTTCATTAAGTTTGTGAGTCCAAT
GAACGTCACCTGTATGTGCATGGTGGAGCACCATCCGCTGGAACATGGAC
AGCCTATCAGAGGTCACAACTCTGACAAAAACTGACTTTTCCTCTTCCAG
TAACCATCAGTTATCAATAACTTCTTGGCTAGTGATGGACTGGCTAGACC
TTGTTCGGATCGAGTTGCTGTGAGTTCATGTGTGGAATGGCTTTGTCATA
TCCTGAAAGCATTGTTCCACAGCTGTCCTCCACTTCCTGTGGCTCTTATA
ATCTCTCCACCTCTTCTTCCACAATGACCCCTGAGCCCTACAAGAAGGGA
ATCTAATAGAGATGTGTTGTTTACAGTTTCCTCTGAGATTGAAATGTTCC
ACAGGAGAGCTCCTTAAGAAGGAAGGTAGACAACAAACTAGGTTCAGGAA
GTCCCTGTCCCTGACTAGCCTCATTAGGCACCTTCTTCACCATAGTATGT
AGCCAAGCTGTCTATAAAACTTTACCCTAGCAGCTGTCTGTATAAACAAG
AACATTTTACTTGTCTGCCACACATCCAATCCCCCTATTTATTCTATAAC
GACCCTCTTCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_d08.b1 MSMg01no378_d08.b1 CHROMAT_FILE:
MSMg01no378_d08.b1 PHD_FILE: MSMg01no378_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:38 2005
         (257 letters)



>mm_chr13_81745788_81746444
          Length = 657

 Score =  464 bits (240), Expect = e-135
 Identities = 247/250 (98%), Gaps = 2/250 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttgaagctccattccccatggccattcattcctatcatcctgtgtaagacagt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ggaattcttgaagctccattccccatggccattcattcctatcatcctgtgtaagacagt 282

                                                                       
Query: 64  agactaggcaggaacacagtgaggctcagcacagtgtctgctgctagagtggaggaaagc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 agactaggcaggaacacagtgaggctcagcacagtgtctgctgctagagtggaggaaagc 222

                                                                       
Query: 124 ctgtattcttaaatcaatctccctccctccttctctcctccctctctccctctctccttc 183
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 221 ctgtattcttaaatcaatctccctcactccttctctcctccctctctccctctctccttc 162

                                                                       
Query: 184 aggtcccccatctgtgtgagtatgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 243
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 161 aggtcccccatctgtgtgagtatgtgta--tgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 104

                     
Query: 244 tgtgtatgaa 253
           ||||||||||
Sbjct: 103 tgtgtatgaa 94


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 657
Length adjustment: 9
Effective length of query: 248
Effective length of database: 648
Effective search space:   160704
Effective search space used:   160704
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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