BAC Information

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BAC

Clone NameMSMg01-380H05
Chromosome13 (Build37)
Map Location 96,419,696 - 96,605,967
singlet/doubletdoublet
Overlap geneIqgap2, F2rl2
Upstream geneTbca, Otp, Wdr41, Pde8b, Zbed3, Aggf1, Crhbp, S100z, F2rl1, F2r
Downstream geneSv2c, LOC667582, 1200014M14Rik, 9330128J19Rik, Polk, Col4a3bp, Hmgcr, LOC100039456, LOC625662
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380H05.T7 (MSMg01no380_h05.b1)MSMg01-380H05.TJ (MSMg01no380_h05.g1)
ACCAG484823AG484824
length767783
length of high quality
(start - end)		435 (56 - 490)480 (64 - 543)
definitionCHROMAT_FILE: MSMg01no380_h05.b1 PHD_FILE: MSMg01no380_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:32 2005CHROMAT_FILE: MSMg01no380_h05.g1 PHD_FILE: MSMg01no380_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,419,696 - 96,420,130)(96,605,488 - 96,605,967)
sequence
GACGCTAAACGACTCACTATTTCCAGAGGATCCGCGGAATTCAGTCTTCT
AGCAGCCTTCAGATGAAGAGGTAGAACTCTCAGCTCCTCTTGTACCATGC
CTGCCTGGACATTGCCATGTTCCTACTTTGATGAACCTGTAAGCCAACCT
CAATTAAATGTTGTCCATATAAGCGTTGCCTTGTCACGGTGTCTGTTCAC
AGCAGTAAAACCCTAACTAAGACACCCACCTTGACCCAGTCTCCCCAGCT
GGAGCCACTGTCCTGACTTCCTATTTTATTTACCAATCATCTTCAGATAT
TTGGAAAGAAAACTAAAAGAGGCTGAGGGTGGTCCCCAGACCACAATACA
GATGGCTTTTAAAGTCTTCCTGACAGGCTCAGCTACAGCAGAAGGTGTCG
CTCCAAGTCCAAGCCTTGGCAGCTGCCCTGAGGTCAAGGGCAATCCAGCA
GAAGGAACAGGGGAGATTTGCCAGACCCCATCCCACCAGGGTCCAGCCTA
AGTCAACTCTGCCAACATGGGCCTGTTTTAAATGTGGCAAGGAAGGACAC
TGGTCCAGCTACTGTCCCAACCCTCAGCAAGCCTACAGGCCAAGCCTATT
CTGTTAGTATCCTGGTTACCTGAAGTCAAAGTGTCCTAATACGGTCTTAT
TTCTTTGTTCCTGCCCCGGAGTTCAAGCTCCCTCCTCCCTATATCCCTCC
ACTTTTTCCTGCCTAAAACTCTCTCTATTGCCTCGAAGCATTCAACCTTT
CTTTCTTTATTTCCTCT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAGATCCGAGGACACTCATGGATGAGCACTGAACTCCA
AAGCTGGACATGGTCATCTCTATGGTGAGATGGGAGGCAGAGCCCACAGG
CCAACTAGCCTGGCATGCTCAGTGGTAGCCAGCATACAACCCTGTCTCAA
AGCCAGTGAGGACCAAAACATATGGTTGCCCTCTGACCCTGTACCCGTGC
TACAGCATCTAAATACCCACATTCACAGTAAAGCACACATGCATACTTAC
ATGTATGCATTTAAATTACTCTGTAGACTCAATGAATCCCCAGCTAAGTT
CCAGTTACTGTTTTGTTGTTTTCAGTCAGAAAGAAAACACAGGGGCTAGA
GAGATGCTCAGTGGTTAGGAGCAGTTGCTGCTCTTGCAGAAGGCCCAGGT
TCTGTTCGCAGCACCCACGTAGTGGGCAACAGTCTTTTGTAACTCCAATT
CCAAGGGGATCCATCTTCTTCTTCTGGNCTTGCTGGGCACCAGGAATGTA
CATGGCTCACAGACTTGCATACAGACAAAGCATACATGGATAATTAAATA
AAAAGTACCAAGACTGTATCTGATCTAAGACTTGTAGTGGACCAAGTTTA
AAACTTAACTTTAAAATGGAACAAAGCTCCCTTGGTTTTGGGTACACCAC
CCTCTTAATACCTGGTTTTTGTAAAAACTAAACCATCCCTCATCTTTCTA
TATAATTTTTAAGCCCATTTCCTAGCCACCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_h05.b1 MSMg01no380_h05.b1 CHROMAT_FILE:
MSMg01no380_h05.b1 PHD_FILE: MSMg01no380_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:32 2005
         (435 letters)



>mm_chr13_96419496_96420330
          Length = 835

 Score =  841 bits (435), Expect = 0.0
 Identities = 435/435 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccttcagatgaagaggtagaactctcagctcctcttgtaccatgcctgcctggacattgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccttcagatgaagaggtagaactctcagctcctcttgtaccatgcctgcctggacattgc 260

                                                                       
Query: 61  catgttcctactttgatgaacctgtaagccaacctcaattaaatgttgtccatataagcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgttcctactttgatgaacctgtaagccaacctcaattaaatgttgtccatataagcg 320

                                                                       
Query: 121 ttgccttgtcacggtgtctgttcacagcagtaaaaccctaactaagacacccaccttgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgccttgtcacggtgtctgttcacagcagtaaaaccctaactaagacacccaccttgac 380

                                                                       
Query: 181 ccagtctccccagctggagccactgtcctgacttcctattttatttaccaatcatcttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagtctccccagctggagccactgtcctgacttcctattttatttaccaatcatcttca 440

                                                                       
Query: 241 gatatttggaaagaaaactaaaagaggctgagggtggtccccagaccacaatacagatgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatatttggaaagaaaactaaaagaggctgagggtggtccccagaccacaatacagatgg 500

                                                                       
Query: 301 cttttaaagtcttcctgacaggctcagctacagcagaaggtgtcgctccaagtccaagcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttttaaagtcttcctgacaggctcagctacagcagaaggtgtcgctccaagtccaagcc 560

                                                                       
Query: 361 ttggcagctgccctgaggtcaagggcaatccagcagaaggaacaggggagatttgccaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttggcagctgccctgaggtcaagggcaatccagcagaaggaacaggggagatttgccaga 620

                          
Query: 421 ccccatcccaccagg 435
           |||||||||||||||
Sbjct: 621 ccccatcccaccagg 635


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space:   351876
Effective search space used:   351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no380_h05.g1 MSMg01no380_h05.g1 CHROMAT_FILE:
MSMg01no380_h05.g1 PHD_FILE: MSMg01no380_h05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:32 2005
         (480 letters)



>mm_chr13_96605440_96606319
          Length = 880

 Score =  922 bits (477), Expect = 0.0
 Identities = 479/480 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatccgaggacactcatggatgagcactgaactccaaagctggacatggtcatctctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 agatccgaggacactcatggatgagcactgaactccaaagctggacatggtcatctctat 469

                                                                       
Query: 61  ggtgagatgggaggcagagcccacaggccaactagcctggcatgctcagtggtagccagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ggtgagatgggaggcagagcccacaggccaactagcctggcatgctcagtggtagccagc 409

                                                                       
Query: 121 atacaaccctgtctcaaagccagtgaggaccaaaacatatggttgccctctgaccctgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 atacaaccctgtctcaaagccagtgaggaccaaaacatatggttgccctctgaccctgta 349

                                                                       
Query: 181 cccgtgctacagcatctaaatacccacattcacagtaaagcacacatgcatacttacatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 cccgtgctacagcatctaaatacccacattcacagtaaagcacacatgcatacttacatg 289

                                                                       
Query: 241 tatgcatttaaattactctgtagactcaatgaatccccagctaagttccagttactgttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tatgcatttaaattactctgtagactcaatgaatccccagctaagttccagttactgttt 229

                                                                       
Query: 301 tgttgttttcagtcagaaagaaaacacaggggctagagagatgctcagtggttaggagca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 tgttgttttcagtcagaaagaaaacacaggggctagagagatgctcagtggttaggagca 169

                                                                       
Query: 361 gttgctgctcttgcagaaggcccaggttctgttcgcagcacccacgtagtgggcaacagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 gttgctgctcttgcagaaggcccaggttctgttcgcagcacccacgtagtgggcaacagt 109

                                                                       
Query: 421 cttttgtaactccaattccaaggggatccatcttcttcttctggncttgctgggcaccag 480
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 108 cttttgtaactccaattccaaggggatccatcttcttcttctggccttgctgggcaccag 49


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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