BAC Information

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BAC

Clone NameMSMg01-380N08
Chromosome13 (Build37)
Map Location 18,154,875 - 18,155,119
singlet/doubletsinglet
Overlap genenone
Upstream gene5033411D12Rik, 2810021B07Rik, Cdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310
Downstream gene4930448F12Rik, Pou6f2, Vps41, Amph
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380N08.T7 (MSMg01no380_n08.b1)MSMg01-380N08.TJ (MSMg01no380_n08.g1)
ACCAG485116AG485117
length787836
length of high quality
(start - end)
343 (34 - 376)247 (66 - 312)
definitionCHROMAT_FILE: MSMg01no380_n08.b1 PHD_FILE: MSMg01no380_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:01 2005CHROMAT_FILE: MSMg01no380_n08.g1 PHD_FILE: MSMg01no380_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCCGCGGAATTCCAAT
GTCTCCCAGAGGCATAGCTTAGTGGTATGATACTTACCTCACTCACACAA
GGCACTGTGTTTGATCCCCAGCACTATAAACTAGGTGGGAAGAAGCACAA
CAAAAATTAAAATGACTTGATTTAAATAAAACCACAAACTTAAAAACAGG
AAAGAAAGAATTCCAATGTCCTCTTGGATTTTTTCTTTAGTGGATATCTC
TTTTGATTAATTTTAGTTTGAAGTCAATTTTGTCAGATATAAAAAATGGC
TATGCCAGCTTGCTTCTTAGGTCCATTTGCTTGGAATATCATTTTCAAAC
CCTTTCCCCTGGGGTGATGTTAAGGTGTGTTCTTGCATGCATTAGAATGA
CGCCCCCCCCCCTGTTTCTATCCCGCCAGTCTGTTGTCCTTCTATGGGTA
TACCGACCCTGCCTATGTTCCTCAATCTCTTCGTTACCCCTGGCTCGCTT
AATTTTTTCCTCCCCGCTTTCCCTCCTTTTCCCCCCCTCCCCTTTTTCCC
CCCCTTTTCTCTTTTTTTCCATTATTACCCCCCTTCTTTTCCCTCTCCTT
TTTTTTTCCATCCCCTACCACATTGTATTTCCCCTCTCCTTTTCCCTCTC
CCTTTCTTTTTTACCCTTCCTCACCCTCCCCTTCATTCTCCCTTATTCCT
TACTCCCCCTTTCCCCCTCTTCCTCCTTCTTTTTTTACTTCTCTTTTTAT
TTCCCTCTTTCTACTATTTCCTCTCTTTTTATTATTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAAACCTCGGCTGGTTCTTGGTTAAATGACTCCAGG
AAGGGAGTGTTTGTATTTCCTTCCTTAATATGACACCTATGAGTCGTTGG
TGACTTGAAATTCATTGCTGATACATATAATTTGCAGAAGCAACATTGAT
CCAAATGTTTTGGCAGGGAGAATCACTGTACTGTGTCTGTATCCTTAGAA
GTGGAAAGGCAAGAGGTGAAATATCCCAGGATTCCTCAAGGCTCTGGGTA
CTTTATTCTATATTGTACATGAATTTTCTTAATTTCAGAAACTGCTTATT
ATATTCTACTACCCCCCGACTGTGTTATTATTATACACCGATTTTGCCTA
CTGTCCCCCCCCCCCCCTATTATTTTTATACATCTGATTATTCTCCACTC
CTCCCACTGCTTCTTCCCCTCCTCTACTTTCTCCCCTCCTTCTCCCTTTT
CTTTCTCCCCCTCCTCTTCTTTCTCTTTTATCCTTTTTTTCCTCTCTTTT
CCCCTCCTTTTTTTTCTTTCCCTCTTTTTTTCTCTTCTCCCCCCTCTTTT
TCTATCTCTATTTTTTTACTCTTTCTTTCCCTCCTCTCCCTTTTTTTTCC
TCTTTTTTTCTCTCTCCCCCCCCTTTTCTTTTTTTTTTTTCTTTATCACT
TCCCCTCTTTCTCACATACATACTCTCTCTTTTCCCTCTTTTTCTTTCCT
ACCTCTTCCCTATTTCTTTCTCTCCTTCCCTCCTTTTTTCTTTTTTCTTT
TTTCGCTTCTTCCTCCCCCTCCTTTACCCCCCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_n08.g1 MSMg01no380_n08.g1 CHROMAT_FILE:
MSMg01no380_n08.g1 PHD_FILE: MSMg01no380_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:01 2005
         (247 letters)



>mm_chr13_18154564_18155210
          Length = 647

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaacctcggctggttcttggttaaatgactccaggaagggagtgtttgtatttccttcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aaacctcggctggttcttggttaaatgactccaggaagggagtgtttgtatttccttcct 497

                                                                       
Query: 61  taatatgacacctatgagtcgttggtgacttgaaattcattgctgatacatataatttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 taatatgacacctatgagtcgttggtgacttgaaattcattgctgatacatataatttgc 437

                                                                       
Query: 121 agaagcaacattgatccaaatgttttggcagggagaatcactgtactgtgtctgtatcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 436 agaagcaacattgatccaaatgttttggcagggagaatcactgtactgtgtctgtattct 377

                                                                       
Query: 181 tagaagtggaaaggcaagaggtgaaatatcccaggattcctcaaggctctgggtacttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tagaagtggaaaggcaagaggtgaaatatcccaggattcctcaaggctctgggtacttta 317

                
Query: 241 ttcta 245
           |||||
Sbjct: 316 ttcta 312


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)