BAC Information

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BAC

Clone NameMSMg01-381D06
Chromosome13 (Build37)
Map Location 28,811,925 - 28,812,246
singlet/doubletsinglet
Overlap genenone
Upstream genePrl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1, LOC100042388, LOC100042393, LOC100042399, Ppia-ps13_297.1
Downstream geneLOC626683, 2610307P16Rik, Sox4, LOC100041135, Cdkal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381D06.T7 (MSMg01no381_d06.b1)MSMg01-381D06.TJ (MSMg01no381_d06.g1)
ACCAG485399AG485400
length713750
length of high quality
(start - end)		496 (36 - 531)502 (75 - 576)
definitionCHROMAT_FILE: MSMg01no381_d06.b1 PHD_FILE: MSMg01no381_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:32 2005CHROMAT_FILE: MSMg01no381_d06.g1 PHD_FILE: MSMg01no381_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTTCC
TGTCAGCCTTGCCACATCCGAGTGTGCTGAGAGCCAAGGTTGGCACTTGC
AAGGCTTGAAACAAGGGGTGGGTAATCGAAAGTACTTCTATAAAACGTGT
GTGTGTGCGTGCGTGCACGAGCGCACATAGTGTATTATGCATATGTGCAT
ATTTGTGTGTATCTTTGTATATGAGTATGTGCAAGTGTGTGCGGGTATGA
TGTAGACATGGGTGTTTTTATTAGTCTTCACATTATTTTTTTCACTGTCT
CTTACTATACCTGGAACCCCATGATTTGGCTGTGCTTCCTGGCACCAAGC
ACCAGGTCTCGTCCTGTTTCTCCCTCTCCAACAATGGACTTATAGCAGTA
GCATACTTCCAGGCTTGGCTTTATATATCGGTGCTGGGGAACCCAAACTC
AGATCCTCATGTTGGCACATATAATACTTTACCAACTGGGCCATCTCTTT
GCCCTTTAACATTGATTTCTTAAATCATAATTTTCCTAGTCTGACTCGGC
TGCCTTTTGTGTGTTGTCAGTCAAATCTTAACGATGCTGTCCTTGCACCC
TGCTGATCCGGGATGTTTATTTACAGACCCCTGTTGAGTGTGATTAAAAC
ACCTGTGACCTGTCTTACGTCTCTTTTCCACAACCCTACGGCATTTTTGC
TTCTTTGATTGTN

AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTATATCTGCTAAGTTTCTTCTTATT
CTAAATATAAGGTTCCTATAATCTGATTACTTTTAATACACTCACTAGAT
TTTTAATGGACAGTCTTCTACTGACATCTAAAAATGAAATCATACCAATC
TTTTATAGACTTTTTTTCAAAAGACTTAAGGAGGAAGAATGGAAGGAAAC
TTAGACACCTCCTAAATCATTGTCTAAATATTACCCTGACATCAAAGCCA
GACAGGGTGGCTACAGATAGAAAGAAGAGAGAAATATAGATAGAAGTAGA
ATAGAAAACTATAGCTCAATGTCTCTCAGGGACATCGATGCAGAAAAACA
AAACCAAAAATTCCTAATGAAATATTAGCAAACTCAGTTCAGTCACACGG
TGAAAGGAAAAGGAATGGAGGATGGTTCAAGACACTAAAACCAATCATGA
CAATATATGACATTAATAGGAAAAAAGGACAAAATTTTACATGATCCCCA
AAAGTAATACAGAATAAAATAACAACCCAAAATCAATATCCATTGTCCTT
CTTGACAAAAACACTCCATATACCAGGCAGCATAGGTAATCACCACCACA
TAATTAAAACCCTATACAGACCACTGCAACCCATGGCAAAAAAAAGGAAA
AAAACCTCCTTTTCGAACCTGAACTAAGGGCCCTGAGCCTGCACTCCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_d06.b1 MSMg01no381_d06.b1 CHROMAT_FILE:
MSMg01no381_d06.b1 PHD_FILE: MSMg01no381_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:32 2005
         (496 letters)



>mm_chr13_28811925_28812820
          Length = 896

 Score =  545 bits (282), Expect = e-159
 Identities = 305/322 (94%), Gaps = 16/322 (4%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccttcctgtcagccttgccacatccgagtgtgctgagagccaaggttggcactt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ggaattccttcctgtcagccttgccacatccgagtgtgctgagagccaaggttggcactt 263

                                                                       
Query: 64  gcaaggcttgaaacaaggggtgggtaatcgaaagtacttctataaaac------------ 111
           ||||||||||||||||||||||||||||||||||||||||||||||||            
Sbjct: 262 gcaaggcttgaaacaaggggtgggtaatcgaaagtacttctataaaacgtgtgtgtgtgt 203

                                                                       
Query: 112 gtgtgtgtgtgcg----tgcgtgcacgagcgcacatagtgtattatgcatatgtgcatat 167
           |||||||||||||    || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gtgtgtgtgtgcgcgcatgtgtgcacgagcgcacatagtgtattatgcatatgtgcatat 143

                                                                       
Query: 168 ttgtgtgtatctttgtatatgagtatgtgcaagtgtgtgcgggtatgatgtagacatggg 227
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 ttgtgtgtatctttgtatatgagtatgtgcaagtgtgtgcgggtatgatgtagacatggg 83

                                                                       
Query: 228 tgtttttattagtcttcacattatttttttcactgtctcttactatacctggaaccccat 287
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82  tgtttttattagtcttcacattatttttttcactgtctcttactatacctggaaccccat 23

                                 
Query: 288 gatttggctgtgcttcctggca 309
           ||||||||||||||||||||||
Sbjct: 22  gatttggctgtgcttcctggca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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