BAC Information

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BAC

Clone NameMSMg01-381D08
Chromosome13 (Build37)
Map Location 20,815,545 - 20,816,002
singlet/doubletsinglet
Overlap genenone
Upstream geneA530099J19Rik, Gpr141, LOC432730, Elmo1, LOC100040226, LOC665381
Downstream geneLOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381D08.T7 (MSMg01no381_d08.b1)MSMg01-381D08.TJ (MSMg01no381_d08.g1)
ACCAG485403AG485404
length724769
length of high quality
(start - end)
413 (37 - 449)459 (72 - 530)
definitionCHROMAT_FILE: MSMg01no381_d08.b1 PHD_FILE: MSMg01no381_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:32 2005CHROMAT_FILE: MSMg01no381_d08.g1 PHD_FILE: MSMg01no381_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTG
TTCATTTCTGAGCCCCATTTTTTAATGGGGTTGTTTGATTTTCTGAAGTC
CACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATT
TAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTCTTTGTCTTA
TTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCA
TTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGA
ATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCT
ATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTTGATCCATTTAGA
TTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTTCTAC
AAGATAACAACCAGTTGTGCCAGCTCCATTTGTTGAAAATGCTGTCTTTC
TTCCACTGGATGGTTTTAGCTCCCTTGCCGAAGATCCCGTGACCATATCC
GCGTGGTTTCATTTCTGGTTCTTCCATTCCATCCCATTGCTTCATTTGTC
CGCTTTATTTCCGTATCCTGCCACTTTTTCCCTCCTTGCCTTTGTAGTTT
TCTCTTACGTCCCCTCCGTTTCCCTCCCCTTTTCCCCCCTTTTTTTCCCC
CTAAAATACCTTTTTCTCCTCTTC
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTGGTGATTTTTGTTAATGTCAAGCCAA
CAGAGTGTTAGTGCAGAATTATGGTGTTTAACACATCCCGAAAAAGACTG
CAGTAGAAAAGCATGGCAAATAGAAAGAAAATGCCTACTTCCTCAAACAA
AATGCTTTGGCAATTGTTTCAGTCTTGGCTAAGGCATATATGATTTTTGG
CTTGTGTTTACTTTATGGGCCAATCATCAAACCCTGATGTGACTATGAAT
AAAGATTATGTAGAATATGAAAAACAAATTACAGAGATGACTATGGAAGC
TTTACAGATTCCAAAGAATGGGTGCCAGAATGGAAAAGCATCTTGGCAGA
AGCTGCCCTTGGAAGAGATGGGGTAGGGTAATTATCTACTAACTCTTAGG
ATGTTTACCCTCTGCTTCTTTAGAAGAGAAATCACAGGTGATAAAATATC
CCCTTACTTCCATCAACCTCTTTCTCTCGTACATTGATGACTCTGGCTTA
TTTAAATGCATTTTTAAATGGCTAAATTTAAAGACTTAAAAGGATTTTTC
CCATAGTTATTTTAAAACTTCCCCTGTATCACCCCACCCTATCCATTATA
GAGAACCCAAGCCCTCTTTGTAAATTCCCTGAACTGAAAAACCCCTCCAA
CGGCCCGCAAATAATCTTTAAACTTTTTCATAACCAACCATTCCCTTCCT
TATTCCCCTTCTCTCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_d08.g1 MSMg01no381_d08.g1 CHROMAT_FILE:
MSMg01no381_d08.g1 PHD_FILE: MSMg01no381_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:32 2005
         (459 letters)



>mm_chr13_20815345_20816202
          Length = 858

 Score =  864 bits (447), Expect = 0.0
 Identities = 456/459 (99%), Gaps = 1/459 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtggtgatttttgttaatgtcaagccaacagagtgttagtgcagaattatggtgtttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtggtgatttttgttaatgtcaagccaacagagtgttagtgcagaattatggtgtttaa 260

                                                                       
Query: 61  cacatcccgaaaaagactgcagtagaaaagcatggcaaatagaaagaaaatgcctacttc 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacatccagaaaaagactgcagtagaaaagcatggcaaatagaaagaaaatgcctacttc 320

                                                                       
Query: 121 ctcaaacaaaatgctttggcaattgtttcagtcttggctaaggcatatatgatttttggc 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 ctcaaacaaaatgctttggcaattgttttagtcttggctaaggcatatatgatttttggc 380

                                                                       
Query: 181 ttgtgtttactttatgggccaatcatcaaaccctgatgtgactatgaataaagattatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtgtttactttatgggccaatcatcaaaccctgatgtgactatgaataaagattatgt 440

                                                                       
Query: 241 agaatatgaaaaacaaattacagagatgactatggaagctttacagattccaaagaatgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaatatgaaaaacaaattacagagatgactatggaagctttacagattccaaagaatgg 500

                                                                       
Query: 301 gtgccagaatggaaaagcatcttggcagaagctgcccttggaagagatggggtagggtaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgccagaatggaaaagcatcttggcagaagctgcccttggaagagatggggtagggtaa 560

                                                                       
Query: 361 ttatctactaactcttaggatgtttaccctctgcttctttagaagagaaatcacaggtga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttatctactaactcttaggatgtttaccctctgcttctttagaagagaaatcacaggtga 620

                                                  
Query: 421 taaaatatccccttacttccatcaacctctttctctcgt 459
           ||||||||||||||||| |||||||||||||||||||||
Sbjct: 621 taaaatatccccttact-ccatcaacctctttctctcgt 658


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 858
Length adjustment: 10
Effective length of query: 449
Effective length of database: 848
Effective search space:   380752
Effective search space used:   380752
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)