Query= MSMg01no381_e23.b1 MSMg01no381_e23.b1 CHROMAT_FILE:
MSMg01no381_e23.b1 PHD_FILE: MSMg01no381_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:40 2005
(419 letters)
>mm_chr13_47820170_47820988
Length = 819
Score = 768 bits (397), Expect = 0.0
Identities = 418/435 (96%), Gaps = 16/435 (3%)
Strand = Plus / Minus
Query: 1 atggtgaatatagtttttgatatttatgataactttcaaataccacaggggtataaatta 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atggtgaatttagtttttgatatttatgataactttcaaataccacaggggtataaatta 441
Query: 61 tgagaaggaaaatatgaggagtttggaggcaatttatgatgtagtaataatcttggcaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgagaaggaaaatatgaggagtttggaggcaatttatgatgtagtaataatcttggcaaa 381
Query: 121 aatacatcgattggagtatttacaaaaaatacaagtaatgtatgcaaaggtatttgccaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aatacatcgattggagtatttacaaaaaatacaagtaatgtatgcaaaggtatttgccaa 321
Query: 181 gatggaatgaagaaacaggagagattacattccatggtgagtccaagttatgacttgggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gatggaatgaagaaacaggagagattacattccatggtgagtccaagttatgacttgggt 261
Query: 241 tattaggagaatagacgatttttggaagaagagcaaaaatcaagccaaggatgtgttttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tattaggagaatagacgatttttggaagaagagcaaaaatcaagccaaggatgtgttttg 201
Query: 301 ----------------tgtcgatttgtggcattgggaggctaaggtactgaggctgcaca 344
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gagagcagggtgattatgtcgatttgtggcattgggaggctaaggtactgaggctgcaca 141
Query: 345 tggcatgaaaagttggcagaaagaaatacaagtctgaggtttcaaaaggcaaacatgagg 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 tggcatgaaaagttggcagaaagaaatacaagtctgaggtttcaaaaggcaaacatgagg 81
Query: 405 aatttataacttaac 419
|||||||||||||||
Sbjct: 80 aatttataacttaac 66
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space: 332100
Effective search space used: 332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no381_e23.g1 MSMg01no381_e23.g1 CHROMAT_FILE:
MSMg01no381_e23.g1 PHD_FILE: MSMg01no381_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:40 2005
(470 letters)
>mm_chr13_47681684_47682553
Length = 870
Score = 739 bits (382), Expect = 0.0
Identities = 433/470 (92%), Gaps = 32/470 (6%)
Strand = Plus / Plus
Query: 1 catattagctgtgtggttagtcacacaaagttgtgtcacatctcgtaccccagacactga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catattagctgtgtggttagtcacacaaagttgtgtcacatctcgtaccccagacactga 260
Query: 61 gatggttcctgttgaaggcagttcttgatggagtttgaggagaccatggagtacaaactc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 gatggttcctgttgaaggcagttcttgatggagtttgaggagaccatggagtacaaattc 320
Query: 121 ttcctcctagagtgaccgacagacagttatcatctccggtgagatcttgggctacggatg 180
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 ttcctcctagagtgaccgacagacagttatcatctctggtgagatcttgggctacggata 380
Query: 181 tgccagtgagacagtgccttccacgagagtatgtgtgagtgtgggtacacaacgcaatgc 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 tgccagtgagacagtgccttccacgagagtatgcgtgagtgtgggtacacaacgcaatgc 440
Query: 241 atgtgcccacactcatacacatccacccatctatgcatccatccatccatccatccatcc 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgtgcccacactcaaacacatccacccatctatgcatccatccatccatccatccatcc 500
Query: 301 atctatgcatccatccatccatccacacatacatacatacatacatacatacatacatac 360
||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atc----catccatccatccatccacacatacatacatacatacatacatacatacat-- 554
Query: 361 atacatacatacatacatacatacatgtgttccaaatcacacactcacacaattatttac 420
||||||||||||||||||||||||||||||||||
Sbjct: 555 --------------------------gtgttccaaatcacacactcacacaattatttac 588
Query: 421 acaaaccacagagggcatcagtgcacagcagtcaccagtcatttccttgt 470
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 acaaaccacagagggcatcagtgcacagcagtcaccagtcatttccttgt 638
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space: 395600
Effective search space used: 395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
