BAC Information

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BAC

Clone NameMSMg01-381F15
Chromosome13 (Build37)
Map Location 22,337,995 - 22,338,523
singlet/doubletsinglet
Overlap genenone
Upstream geneGpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480
Downstream geneV1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381F15.T7 (MSMg01no381_f15.b1)MSMg01-381F15.TJ (MSMg01no381_f15.g1)
ACCAG485513AG485514
length751774
length of high quality
(start - end)		434 (57 - 490)528 (67 - 594)
definitionCHROMAT_FILE: MSMg01no381_f15.b1 PHD_FILE: MSMg01no381_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:44 2005CHROMAT_FILE: MSMg01no381_f15.g1 PHD_FILE: MSMg01no381_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGGC
TACCTCCCAACTTCTCTTCTATCGGGTTCAGTGTATCTAGTTTTATGTTG
AGGTCTTTGATCCACTTGGACCTGAGTTTTGTGCAGCATGATAAATATGG
ATCTATTTGCCTTCTACTATATGCAGACATTCAGTTATACCAGCACAATT
TGTTGAAGATGCTTTCTTTTTTTCTATTGTATAGGTTTGTTTTCTTGCCA
AAAATTAAGTTTCCATAGGTGTATTGGTAAATTTTAGGGTCTTCAATTTG
ATTCCATTATATTTTATCTAAACTCCCTCCAGGCGTTCTTCTGTTGTTCA
GAATTGTTTAAGCTATTCTGAGGTTTTCTTGTTTGTTCATTTTTTCCCCC
ATAAAGGTCTGTAAAGATTTGTGTTGGAATTTTGATAGGAATCTGAGGAT
TTTTGTTTTTTTTAGCTTCCATTTTCACTTTATTGTTGTTGTTGGTGCTG
TTGTTCTCTTTTTTTACACTCCAGATTTTCCTCTACTCCCGGTCCATCCT
CTGACTGTTGCACAACCCTTACCTTCTTTCCACACCACTCTTGTTCACGG
GGAGATCCCCCTCCTCCAAAACCCCCCTACACCCCTAAATTCCCTGAAAG
CTTCAGGCTCCTTGGGAGATAAGATGTTTCCCTTTCTGGGCGGAAGCCAT
AACCCAGGAAGCCTCTGGCGGGATAGTTGGGGGGCGGCTCCTTTTTCTCT
T

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTAAAATTATGTCATTATTTTTTAAGCTCTTTTA
AAATGGGACTGCTATTAGGTCCTTTCTGATAGTCAAAACTTCAATGAATT
CTTGGCCAGTCCCTAAGTTTCACCAGTAATTGCTTCTGAGATAATAAGCA
ATCATTCTATTACTTAGAGCACATTCCAAAGATTGTAAAACCATTAACCA
AATGTCTTAAAAGGGGAATTAATAATTTATTACAGGTGGTAGAACAGAAT
ATAAAGCATTTACTGGATTTATCTATATAAACTTTAGTCATAGCTTAGTT
ATGGTTTTTAATTGTTCAATTTAATTTAAATTGTTCAATTTATGATTTGA
ATTTATGTGTAAACCTGTGATAAACTTTTTACCATGTGATCATGTATTCG
GGAAGATGTATAAGTGCTGAGTACAAGAGAAGAGGGGCACAGCTCCTTAT
CCCCTTTTCTTAGCAATTCTCCTTGTTCCTACTTTTCTTGGCATTAGTCT
CCTTATGTTCCTCTTCTTAGCACTCCTTATCCTCTTTTTCTTAGATCCCA
CTATTCCCTTTTCCTAGATCCCTTATATCCCTTTTCTTATGAGCCTGTTT
TCCCTTTTTTCCTCTGAAGGTTTCATAGAAACTTTTTACACTTAAAAATA
TTACAAAAATCACTTTCTAAGAGCCCCTTTTTCTTTCCCTTTTTTATAAG
GAATTAACTCCTTTAATTTCCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_f15.g1 MSMg01no381_f15.g1 CHROMAT_FILE:
MSMg01no381_f15.g1 PHD_FILE: MSMg01no381_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:44 2005
         (528 letters)



>mm_chr13_22337796_22338723
          Length = 928

 Score =  971 bits (502), Expect = 0.0
 Identities = 523/530 (98%), Gaps = 3/530 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaaaattatgtcattattttttaagctcttttaaaatgggactgctattaggtcctttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ctaaaattatgtcattattttttaagctcttttaaaatgggactgctattaggtcctttc 259

                                                                       
Query: 61  tgatagtcaaaacttcaatgaattcttggccagtccctaagtttcaccagtaattgcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgatagtcaaaacttcaatgaattcttggccagtccctaagtttcaccagtaattgcttc 319

                                                                       
Query: 121 tgagataataagcaatcattctattacttagagcacattccaaa-gattgtaaaaccatt 179
           ||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 320 tgagataataaacaattattctattacttagagcacattccaaaagattgtaaaaccatt 379

                                                                       
Query: 180 aaccaaatgtcttaaaaggggaattaataatttattacaggtggtagaacagaatataaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aaccaaatgtcttaaaaggggaattaataatttattacaggtggtagaacagaatataaa 439

                                                                       
Query: 240 gcatttactggatttatctatataaacttt-agtcatagcttagttatggtttttaattg 298
           |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 440 gcatttactggatttatctatataaa-tttcagtcatagcttagttatggtttttaattg 498

                                                                       
Query: 299 ttcaatttaatttaaattgttcaatttatgatttgaatttatgtgtaaacctgtgataaa 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttcaatttaatttaaattgttcaatttatgatttgaatttatgtgtaaacctgtgataaa 558

                                                                       
Query: 359 ctttttaccatgtgatcatgtattcgggaagatgtataagtgctgagtacaagagaagag 418
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 559 ctttttaccatgtgatcatgtattcggaaagatgtataagtgctgagtacaagagaagag 618

                                                                       
Query: 419 gggcacagctccttatccccttttcttagcaattctccttgttcctacttttcttggcat 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gggcacagctccttatccccttttcttagcaattctccttgttcctacttttcttggcat 678

                                                             
Query: 479 tagtctccttatgttcctcttcttagcactccttatcctctttttcttag 528
           || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tattctccttatgttcctcttcttagcactccttatcctctttttcttag 728


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space:   475524
Effective search space used:   475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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