BAC Information

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BAC

Clone NameMSMg01-381O02
Chromosome13 (Build37)
Map Location 20,209,515 - 20,209,880
singlet/doubletsinglet
Overlap genenone
Upstream geneAmph, LOC624044, Tcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141, LOC432730
Downstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381O02.T7 (MSMg01no381_o02.b1)MSMg01-381O02.TJ (MSMg01no381_o02.g1)
ACCAG485917AG485918
length702741
length of high quality
(start - end)		370 (40 - 409)594 (76 - 669)
definitionCHROMAT_FILE: MSMg01no381_o02.b1 PHD_FILE: MSMg01no381_o02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:25 2005CHROMAT_FILE: MSMg01no381_o02.g1 PHD_FILE: MSMg01no381_o02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CTTCTCACGCTATAAATGTCATTGACTAGAAGAACACAGGGTGTCCTGCA
AGTAAACACTGTTACCCATGGCAACCCACTTGCCCAGCAGTAGACTTTGA
AGCAATCAAGCACTACACTCCCACTGCATTACACTATTAATGTTTGGGGG
CCATTTATACTGAGTAAAATGTTTAGGAAGCCACTGCATAAAGCCATGAT
AGCATTCTGGCCCTAACAGATCAATAAAAATTGGTATTCACTCATGCTAA
ATAAACTCACTAATTTAGGAATCTACTTTTGTGAATGCCCATTTTGGTCA
GTTCTAGCAGCTGAACTTCACTTAATTGCAGAAGGCCAGCTAATTTGAAT
AATGTAAAATGGTGAGCCATAATTAATTAACCAATTATGCTATAACCAAT
TAGATCTTCTCTATATCTAATTTCTGCTTTCTGACTCTAAATGCTGCCTG
ATCATATTGGCCCGAGTCCTCTTTCTTGTTTTGTTTCCGTGTACTAACCC
CCTCACCTAACGTTTTGTTTTGCTCTGTTTCCAATTGCTCTGTATCACAC
TCCGTTTAATTTACCTATTCTAACCACATTTTCCTCTTTACCTTCCCGTT
TATTTTTCCACCACTTCCTATCCCGATTTTCCGAGCATCCCCCTTTCTCC
TN

ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATAAGTAACAGAAACATGAGTATC
CAAATTAATAAAATCAGAAATGAAAAGGGAGACACAAGAACAGAAATGGA
GGAAATTTTTAAAAAAATCAGATCCTACTATAAAAGCCTATACTCAACAA
AACTGGAAAATCTAGATGAAATGGATGGTTTTCTAGACTGATGCCACATA
CCAAAGTTAAACTACCTAAACAGGCCCATATCACACAAAGAAATAGAAGA
AGTCATTAAAAACCTCCCAACCAAAAAAAGCTGAGGGCCAGATGGGTTTA
GTGCAGAATTCTACCAGACCTTCAAAGAAGACCTAACACCAATTTTCCTC
AAACTATTCCATAAAACAGAAACCGAAGGAACACTACTAAATTGTTTTAT
AAAGCCACAGTTACTCTGATACCTAAACCACACAAGGATCCAACCAAAAA
AGAGAACTTCAGACCAATCTCACTTATGAATATCAAAGTAAAAATACTAA
ATAAAATTCTTGCAAACTAAACCCAAGAACACATCAAAACCATCATTCAC
CACGATCAAGTAGGCTTCATCCCAGGGATGCAACGTTGTTTTAATATACG
ANAATCCATTAACATAATACACTATATAAATAAACGTAAAGAAAAAAAAC
CACCTGATCATCTCCTTCAATGCAGAAAAAGCATTTGTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_o02.b1 MSMg01no381_o02.b1 CHROMAT_FILE:
MSMg01no381_o02.b1 PHD_FILE: MSMg01no381_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:25 2005
         (370 letters)



>mm_chr13_20209311_20210080
          Length = 770

 Score =  679 bits (351), Expect = 0.0
 Identities = 363/367 (98%), Gaps = 2/367 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcttc-tcacgctataaatgtcattgactagaagaacacagggtgtcctgcaag 63
           ||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 gaattctcttcgt-atgctataaatgtcattgactagaagaacacagggtgtcctgcaag 512

                                                                       
Query: 64  taaacactgttacccatggcaacccacttgcccagcagtagactttgaagcaatcaagca 123
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 taaacactgttacccagggcaacccacttgcccagcagtagactttgaagcaatcaagca 452

                                                                       
Query: 124 ctacactcccactgcattacactattaatgtttgggggccatttatactgagtaaaatgt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ctacactcccactgcattacactattaatgtttgggggccatttatactgagtaaaatgt 392

                                                                       
Query: 184 ttaggaagccactgcataaagccatgatagcattctggccctaacagatcaataaaaatt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ttaggaagccactgcataaagccatgatagcattctggccctaacagatcaataaaaatt 332

                                                                       
Query: 244 ggtattcactcatgctaaataaactcactaatttaggaatctacttttgtgaatgcccat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ggtattcactcatgctaaataaactcactaatttaggaatctacttttgtgaatgcccat 272

                                                                       
Query: 304 tttggtcagttctagcagctgaacttcacttaattgcagaaggccagctaatttgaataa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tttggtcagttctagcagctgaacttcacttaattgcagaaggccagctaatttgaataa 212

                  
Query: 364 tgtaaaa 370
           |||||||
Sbjct: 211 tgtaaaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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