BAC Information

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BAC

Clone NameMSMg01-381O13
Chromosome13 (Build37)
Map Location 85,434,619 - 85,435,002
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem161b, LOC667111, LOC382786, LOC100042841, LOC100042851, LOC100042857, LOC100042862, Ccnh, Rasa1
Downstream geneLOC435373, LOC675662, Cox7c, LOC100042887, LOC100042893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381O13.T7 (MSMg01no381_o13.b1)MSMg01-381O13.TJ (MSMg01no381_o13.g1)
ACCAG485939AG485940
length702746
length of high quality
(start - end)
---388 (320 - 707)
definitionCHROMAT_FILE: MSMg01no381_o13.b1 PHD_FILE: MSMg01no381_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:28 2005CHROMAT_FILE: MSMg01no381_o13.g1 PHD_FILE: MSMg01no381_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCATTTTCCCGCTTACTACCCCGTTACCTTTCCCATACTCTCGCCTTTA
TTATTGATATCCTAACCCTCGTATGTCGGGACGGCTTCGTTCGATACGCC
CTACTTATGTCGAATAAATACGCAACTTAACACTAATACCTCGTCAAATA
ACGGATGCGCTTCGAATTGGTGGGGGGGTCCATAGCGTTAGTTGTGGTTG
GGCGAATGCATACAAAAAGCAAAATACGGTACGCATTCCTTTCCCTCTTT
TTTATAACTAAAAATTTCCCTGTAAGCCCTTCCGGAATTAATACCCAACT
GAGGCACCGTATATTACTTGCCCTTATTTTTTTTACCCGTCATGCATTTT
TTGCCCCTTTACAACATTGTTAACAATTTGTGGTGGGTAAGGGGGGGTGG
AGATTTTAAGCATATAATGTAAACAATGCCCGTCGCACGCCGATAAAAGA
AATAGAATTTTTTGCGACTCCGCGGCGTTTTTTTCACCCCCGGGATCATA
TTCCAGCTTTGGGATTTGTTTCCACGCCAAGGGGAAATTCACACCAACAC
ATCCGAATTGCGCCCATGTACCACTTATCATTATGCATGCCCCCCTCCCT
ATTTTTTCACCGGCCTTTCCCTGCCGACGCCCTTTTTAAATTACATTACA
TAGCCACCCGTAGACGCAAAATAAATCATATGAAGCATACACCAGGCGGG
GG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCAGAAATTCTTTAATACAGTTGTGAGCACTTTATTGCTTCTCGCC
TAATGATCCCACAATCAATTCTTCCTATATTTGCTTAAGCACATTCAGCA
TTCATACTCTGCTATGCTCAATGGGTTTTTTTTTATCAATTTGATAACAG
AAGATGCAAAAATATGTTGGAGTGAGTTACATTAATATTCGAGTTGTCAA
TGAAATGAGAATAAATAACTTTGACTTATTACAAATTTGCACTATTTCCT
TATGAATACCTTTTCTTATGTTTCTAAGATTTATCATTAAATATATTTAC
TAATACTAAATGACTAAAGTTATTTTTGTAAAAATCACAAATGTAATGAA
TTATTTTATTGAATTTAGAAGCTATTCTGCCTTCCAGCACCTCGCTGTTT
AGTACTATCTGTGAATTTAATTAAGACTGTTTATTTCCCTTTGTTAACTG
ATGTTACATAAGATCATACGGAACAGCACTTCCTGCGAAATCCTTGTCAC
TTCCCTCTCCAAACAAATAATTCCATTTTTTAAAATATTTTTTTTACTTT
TAAAATATATTTATTTTATTATATTCAACACAATATACATTTTTATACCA
ATCATAGAAATGATGGACATTTTATTAAATGAACATAAATAGATGTCTTT
TTGTTTGCTTGTTTGTTTTATTTTTAGTAGAGCTTAAAATCTTGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_o13.g1 MSMg01no381_o13.g1 CHROMAT_FILE:
MSMg01no381_o13.g1 PHD_FILE: MSMg01no381_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:28 2005
         (388 letters)



>mm_chr13_85434549_85435335
          Length = 787

 Score =  687 bits (355), Expect = 0.0
 Identities = 379/387 (97%), Gaps = 3/387 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtttctaagatttatcattaaatatatttactaatactaaatgactaaagttatttttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gtttctaagatttatcattaaatatatttactaatactaaatgactaaagttatttttgt 395

                                                                       
Query: 61  aaaaatcacaaatgtaatgaattattttattgaatttagaagctattctgccttccagca 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 -aaaatcacaaatgtaatgaattattttattgaatttagaagctattctgccttccagca 336

                                                                       
Query: 121 cctcgctgtttagtactatctgtgaatttaattaagactgtttatttccctttgttaact 180
           ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 335 ccttgctgtttagtactatctgtgaatttaattaagactgtttacttccctttgttaact 276

                                                                       
Query: 181 gatgttacataagatcatacggaacagcacttcctgcgaaatccttgtcacttccctctc 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gatgttacataagatcatacagaacagcacttcctgcgaaatccttgtcacttccctctc 216

                                                                       
Query: 241 caaacaaataattccattttttaaaatattttttttacttttaaaatatatttattttat 300
           ||||||||||||||||||||  ||||| |||||||||||||| |||||||||||||||||
Sbjct: 215 caaacaaataattccatttta-aaaat-ttttttttactttttaaatatatttattttat 158

                                                                       
Query: 301 tatattcaacacaatatacatttttataccaatcatagaaatgatggacattttattaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 tatattcaacacaatatacatttttataccaatcatagaaatgatggacattttattaaa 98

                                      
Query: 361 tgaacataaatagatgtctttttgttt 387
           |||||||||||||||||||||||||||
Sbjct: 97  tgaacataaatagatgtctttttgttt 71


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 787
Length adjustment: 9
Effective length of query: 379
Effective length of database: 778
Effective search space:   294862
Effective search space used:   294862
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)