Query= MSMg01no382_k12.b1 MSMg01no382_k12.b1 CHROMAT_FILE:
MSMg01no382_k12.b1 PHD_FILE: MSMg01no382_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:28 2005
(559 letters)
>mm_chr13_47278379_47279336
Length = 958
Score = 1011 bits (523), Expect = 0.0
Identities = 544/551 (98%), Gaps = 1/551 (0%)
Strand = Plus / Minus
Query: 7 ggaattcatcgccactgcccactaaagtgtctggggagcacaaggcagagccacttgggg 66
|||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 ggaattcatccccaccgtccactaaagtgtctggggagcacaaggcagagccacttgggg 697
Query: 67 gaatggatatgcaggaagctagtgtgttcagggctaatgacgagagctcaggatccaatt 126
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 aaatggatatgcaggaagctagtgtgttcagggctaatgacgagagctcaggatccaatt 637
Query: 127 ttaatacgaaagaaaattctaaggtcatgattataatttcatccgtgttttaggccaagt 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 ttaatacgaaagaaaattctaaggtcatgattataatttcatccgtgttttaggccaagt 577
Query: 187 gatccctcatagtttggcgagagacctgaactgcagggacagcgttatttgtgtgatgaa 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gatccctcatagtttggcgagagacctgaactgcagggacagcgttatttgtgtgatgaa 517
Query: 247 acgaagtccagttttgaacaaatgacctgcaaacaaacttttagattatttacaagttat 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 acgaagtccagttttgaacaaatgacctgcaaacaaacttttagattatttacaagttat 457
Query: 307 ggccaatatgaaaaaaaaaaaagggtcacaacccctcccccttgaggttttgttttgggt 366
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ggccaatatg-aaaaaaaaaaagggtcacaacccctcccccttgaggttttgttttgggt 398
Query: 367 tgtgttgttgttgttgctgctgctgctgttttctttacagctgctggagaaaataggaag 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tgtgttgttgttgttgctgctgctgctgttttctttacagctgctggagaaaataggaag 338
Query: 427 tatacctgtgtgtgaccaaccattgagcttcaatgtccttccttaggagtcacttctctg 486
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 337 tatacctgtgtgtgaccaaccattgagcttcaatgtccttccttacgagtcacttctctg 278
Query: 487 gaccaactccgaagggccctaagtaaactgcacccagtgcaagcacaggtattcgtttgt 546
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gaccaactccaaagggccctaagtaaactgcacccagtgcaagcacaggtattcgtttgt 218
Query: 547 ggggaagcaga 557
|||||||||||
Sbjct: 217 ggggaagcaga 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 958
Length adjustment: 10
Effective length of query: 549
Effective length of database: 948
Effective search space: 520452
Effective search space used: 520452
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no382_k12.g1 MSMg01no382_k12.g1 CHROMAT_FILE:
MSMg01no382_k12.g1 PHD_FILE: MSMg01no382_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:28 2005
(515 letters)
>mm_chr13_47108890_47109804
Length = 915
Score = 980 bits (507), Expect = 0.0
Identities = 513/515 (99%)
Strand = Plus / Plus
Query: 1 ttcgggtttccccaagcagacgatggctggaccagaggtgtcagcaacaatcacgtttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcgggtttccccaagcagacgatggctggaccagaggtgtcagcaacaatcacgtttcc 260
Query: 61 ttggtgatcgaaggtcacagcagaggcagttactttggaggggaagaggaggttcagccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggtgatcgaaggtcacagcagaggcagttactttggaggggaagaggaggttcagccc 320
Query: 121 gaagctatccacctggccaatcagctgcatagtggagttgaacaccttcacccttgtgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagctatccacctggccaatcagctgcatagtggagttgaacaccttcacccttgtgtt 380
Query: 181 gttacagccagtcctcccaaaggcacaaggatgctctaggaccgcgatggccccggtgag 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 gttacagccagtcctcccaaaggcacaaggatgctctaggaccgcgatggcccccgtgag 440
Query: 241 ccatgacactgcctacccacggggactgcataggtgagcttgcaacctctcaatcctccg 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccatgacactgccaacccacggggactgcataggtgagcttgcaacctctcaatcctccg 500
Query: 301 aaggaccccttcagggaaatccgcttccagcaggtgcaaagtccctgcctctgcatcagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaggaccccttcagggaaatccgcttccagcaggtgcaaagtccctgcctctgcatcagt 560
Query: 361 caccaggaccccattgtgaggggtgatctccacaccccaaggcagggaaaactgctttcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caccaggaccccattgtgaggggtgatctccacaccccaaggcagggaaaactgctttcc 620
Query: 421 cacaaccagcttgatctggccaaagaaatcaaacactttgagggagcagtcgccagcgtc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacaaccagcttgatctggccaaagaaatcaaacactttgagggagcagtcgccagcgtc 680
Query: 481 ggtgacaaccacatggcagtcgttggtgacggcga 515
|||||||||||||||||||||||||||||||||||
Sbjct: 681 ggtgacaaccacatggcagtcgttggtgacggcga 715
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space: 457025
Effective search space used: 457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
