BAC Information

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BAC

Clone NameMSMg01-382M12
Chromosome13 (Build37)
Map Location 95,662,202 - 95,804,957
singlet/doubletdoublet
Overlap geneWdr41, Pde8b
Upstream geneArsb, Cycs-ps3, Lhfpl2, Scamp1, LOC435378, ENSMUSG00000042857, Ap3b1, Tbca, Otp
Downstream geneZbed3, Aggf1, Crhbp, S100z, F2rl1, F2r, Iqgap2, F2rl2, Sv2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382M12.T7 (MSMg01no382_m12.b1)MSMg01-382M12.TJ (MSMg01no382_m12.g1)
ACCAG486605AG486606
length728710
length of high quality
(start - end)		585 (36 - 620)242 (45 - 286)
definitionCHROMAT_FILE: MSMg01no382_m12.b1 PHD_FILE: MSMg01no382_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:37 2005CHROMAT_FILE: MSMg01no382_m12.g1 PHD_FILE: MSMg01no382_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,804,377 - 95,804,957)(95,662,202 - 95,662,443)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATAAT
ACTGCGTCTTACATAACACCCCATCTGCCAGCCTTCTACTAACTTACTGG
CTAAGAAGAATACTTGCTGTCATTTGAGCTCAGCATTAGCATAGTGAAGG
TCTGGTGAGTTTCTCTAAGCCTTTGCTGCCTGTGAGCCCAGCCCCTGCAT
TTCTTGATAAGCTTTCCATCTTGCCTCTGCCTCACTGCCAAGCTCCAGTT
ACTGTCCCATTCATCCTGTGAGCTAGCTGTGCTATTTACAACTGGCCCTC
CAATATGCCTGCTGAAGCTGATGTGTAAGGAATATCTGTGATGCCGGCTA
CTTTCCATGCATCATGGCAGAGCGTCACAGCATCAATTCAAAAGACCTGC
TTGGCTTCTTTGTCAAAGAACCAGCAAACAGACTATAGACAGTTCAGGTG
TTGTAGCTTCTGTGTTCTCAAGAGAATACACAGCACAGGACAGTGCCACC
GTGTGCCCAAGGCTACCTTTCTGCTAAGACTAGGAGGAAACCGAAAGGAA
ATTCCAAAGGTTCCAGCCCCAAGCCCTTCTCTCTCCAAGAGACAGAGATG
GATGCTGGTGTCTAGAAGCCTGTGAATAATGTTCTGTATCCTCCCCCTCC
CCCAGGGAAGCCTGGACCAGCTGGATGAGGTGGCTGCTCTGATTGCTGCC
ACGTCCACGACGTGGATCACCCCGGAAG

TGTTCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGG
GTCTTATGTTTAGATCTATATAGTCTGTTTTGGTTGTTTTTGTAAATCAT
CACTAAATATTCTACTATCTTCTAAAATATGGAAACTTTAACTAGATCTA
GCCTCTAAAGTAGATCAGGGCAAGACATTATGGGTCAGTTTTGAACTAAT
TTTGATAATGTTTTATAGTTTATTGTGCATGTATATTTAACCTAGTACTG
ATTTGTAAGTCTGAGTGTGTATGTGTTAATTTGACATATTTTTTTCATCT
AGGAAGAGACAACCTCATTGAGAAACTGTCTTCATCAAGTCACTCTGTAA
GCAAGCCCATGGGGCATTTTCCAGATTGATAATTGATGAGGGAGGGCCCA
ACCCACTGTGGCCAATGCCACCCCTGGACAGGTGATCCTGGCTTATATAG
ATAAGCCATTGAGACGAGCCATGAGGAGCACTTCTATAATGCTCTTTCAT
GGTCTCTGCTTCAGTTTTTGACTCCAGGTTCCTGCCTTGTTTGTATGTCT
TTGCTTCCCTCTACATTGAACTGTGACTGGGACTTGTAACCCAATTTATC
TCTCTTTTCCTCTCCAAGATGGGATCTGTATTTTTGGTTCCGATCTACTA
GAAACATCAAGCCCACTGGCCCTCGATATCCAGGTCAGTGTGATTTTTTA
CACTTCATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_m12.b1 MSMg01no382_m12.b1 CHROMAT_FILE:
MSMg01no382_m12.b1 PHD_FILE: MSMg01no382_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:37 2005
         (585 letters)



>mm_chr13_95804173_95805157
          Length = 985

 Score = 1093 bits (565), Expect = 0.0
 Identities = 577/581 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcataatactgcgtcttacataacaccccatctgccagccttctactaacttactg 64
           ||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 785 gaattcataatacagtgtcttacataacaccccatctgccagctttctactaacttactg 726

                                                                       
Query: 65  gctaagaagaatacttgctgtcatttgagctcagcattagcatagtgaaggtctggtgag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 gctaagaagaatacttgctgtcatttgagctcagcattagcatagtgaaggtctggtgag 666

                                                                       
Query: 125 tttctctaagcctttgctgcctgtgagcccagcccctgcatttcttgataagctttccat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 tttctctaagcctttgctgcctgtgagcccagcccctgcatttcttgataagctttccat 606

                                                                       
Query: 185 cttgcctctgcctcactgccaagctccagttactgtcccattcatcctgtgagctagctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 cttgcctctgcctcactgccaagctccagttactgtcccattcatcctgtgagctagctg 546

                                                                       
Query: 245 tgctatttacaactggccctccaatatgcctgctgaagctgatgtgtaaggaatatctgt 304
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 545 tgctatttacaactggccctccaatatgcctgcagaagctgatgtgtaaggaatatctgt 486

                                                                       
Query: 305 gatgccggctactttccatgcatcatggcagagcgtcacagcatcaattcaaaagacctg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gatgccggctactttccatgcatcatggcagagcgtcacagcatcaattcaaaagacctg 426

                                                                       
Query: 365 cttggcttctttgtcaaagaaccagcaaacagactatagacagttcaggtgttgtagctt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 cttggcttctttgtcaaagaaccagcaaacagactatagacagttcaggtgttgtagctt 366

                                                                       
Query: 425 ctgtgttctcaagagaatacacagcacaggacagtgccaccgtgtgcccaaggctacctt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ctgtgttctcaagagaatacacagcacaggacagtgccaccgtgtgcccaaggctacctt 306

                                                                       
Query: 485 tctgctaagactaggaggaaaccgaaaggaaattccaaaggttccagccccaagcccttc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tctgctaagactaggaggaaaccgaaaggaaattccaaaggttccagccccaagcccttc 246

                                                    
Query: 545 tctctccaagagacagagatggatgctggtgtctagaagcc 585
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tctctccaagagacagagatggatgctggtgtctagaagcc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no382_m12.g1 MSMg01no382_m12.g1 CHROMAT_FILE:
MSMg01no382_m12.g1 PHD_FILE: MSMg01no382_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:37 2005
         (242 letters)



>mm_chr13_95662002_95662643
          Length = 642

 Score =  468 bits (242), Expect = e-136
 Identities = 242/242 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcagggtcttatgtttagatctatatagtctgttttggttgtttttgtaaatcatcact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcagggtcttatgtttagatctatatagtctgttttggttgtttttgtaaatcatcact 260

                                                                       
Query: 61  aaatattctactatcttctaaaatatggaaactttaactagatctagcctctaaagtaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatattctactatcttctaaaatatggaaactttaactagatctagcctctaaagtaga 320

                                                                       
Query: 121 tcagggcaagacattatgggtcagttttgaactaattttgataatgttttatagtttatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagggcaagacattatgggtcagttttgaactaattttgataatgttttatagtttatt 380

                                                                       
Query: 181 gtgcatgtatatttaacctagtactgatttgtaagtctgagtgtgtatgtgttaatttga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgcatgtatatttaacctagtactgatttgtaagtctgagtgtgtatgtgttaatttga 440

             
Query: 241 ca 242
           ||
Sbjct: 441 ca 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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