BAC Information

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BAC

Clone NameMSMg01-385G18
Chromosome13 (Build37)
Map Location 27,387,404 - 27,387,821
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1
Downstream genePrl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1, LOC100042388
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385G18.T7 (MSMg01no385_g18.b1)MSMg01-385G18.TJ (MSMg01no385_g18.g1)
ACCAG488626AG488627
length724726
length of high quality
(start - end)		530 (40 - 569)419 (70 - 488)
definitionCHROMAT_FILE: MSMg01no385_g18.b1 PHD_FILE: MSMg01no385_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:59 2005CHROMAT_FILE: MSMg01no385_g18.g1 PHD_FILE: MSMg01no385_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
ATGATCGTGGGCCCACTGTCGTACTTCTCTGGCTGTGAAATGAGTTCCTT
GGTCAGAAGCAATACTGTGTGAAATACCATGACGATAGATAAGGCATTCT
GTCAGTCCATGAATGGTGGTTTTAGCAGAGGCATTACGTGCAGGAAAGGC
AAATCCATAACCAGAATAAGTATCTACTCCAGTAAGAACAAAACGCTGTC
CTTTCCACGAAGGAAGTGGTCCAATGTAGTCAACCTGCCACCAGGTTGCT
GGCTGGTCACCTTGAGGAATGGTGCCATATCTGGGGCTCAGTGTTGGTTT
CTGCTGTTGGCAGATCTGGCAATCAGCAGCAGCTGTAGCCAGGTCAGCTT
TGGTGAGTGGAAGCCGGTGTTGCTGAGCCCAAGCATAACCTCCATCTCGA
CCACCATGGCCACCTTGTTCATGTGCCCATTGAGCAATGACAGGGATGGC
TGGGGAGAGAGGCTGACTGTCCACAGAACGGGTCATCTTATCCACTTGAT
TATTGAACTCCTCCTCGGCTGAAGTCACCTTTTGGTGAGCATTTACATGG
GACACAAATATCTTCACATCCTTTTGCCCATTTGGAGAGATCATCCCCAT
ACTTCTTCCTCAGAGGCCTTTCTCACCATTTTTCCAATGTGGATTTTTCA
AGTCCCTGGACATCCCACCATCCT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTGAAGCAGTGTTCACAGGTCAACACCAAG
CTGCAGTGTGACTTTTGAGGGATGCAGCTAAAATTGATTCAGCCATGCTC
CTGTAAGTAATCTCTTACCTGTGCATGAATGAAATCCTTTCTGCCCATTT
ACTGATGTCCTGTTGGGTTGATTAATCATTTATTTATACCTCAGGAGAAG
TGGAACAATTCCTCGGACCTAAAGAGGAAAAGTAGTAACATTTATTCTTG
TCTGGGTCGCATGTGGATTTACTTACCAGAACCTGTGAAGCACTCAGTTC
TCAATCCTAAATTGACACTGGTAGAAAATTTAATTCATATAGTGCTTACA
CTAGGGCAATGAGGTAGGAGTGCGTAGGTGGGCAGGGGAGCAAACTCATA
GAAGCAGGTGCAAGGGGGATGGGATAGGGGGTATGCACAGGAAAACTGTT
GATTTTTACTTTCCCTACTCCTCTATTTTTTTTATCCCATTTTTTACTCC
CTCCTTTCATAATTTATTTTTCTTTTCTTACTATTTTTTCTACTATCCAT
TCTCCCCCTTTTTCTTATTTTAACATTTTACTTATTACTCCTCCCTGATT
TTTTTATTACTATTTTTCCTGATATTTTCATACTGTATTTTTTTTCTGTC
CTTATTCTCTAAACTTTTTTTATTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_g18.g1 MSMg01no385_g18.g1 CHROMAT_FILE:
MSMg01no385_g18.g1 PHD_FILE: MSMg01no385_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:59 2005
         (419 letters)



>mm_chr13_27387204_27388022
          Length = 819

 Score =  801 bits (414), Expect = 0.0
 Identities = 417/418 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgaagcagtgttcacaggtcaacaccaagctgcagtgtgacttttgagggatgcagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgaagcagtgttcacaggtcaacaccaagctgcagtgtgacttttgagggatgcagct 260

                                                                       
Query: 61  aaaattgattcagccatgctcctgtaagtaatctcttacctgtgcatgaatgaaatcctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaattgattcagccatgctcctgtaagtaatctcttacctgtgcatgaatgaaatcctt 320

                                                                       
Query: 121 tctgcccatttactgatgtcctgttgggttgattaatcatttatttatacctcaggagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgcccatttactgatgtcctgttgggttgattaatcatttatttatacctcaggagaa 380

                                                                       
Query: 181 gtggaacaattcctcggacctaaagaggaaaagtagtaacatttattcttgtctgggtcg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtggaacaattcctcggacctaaagaggaaaagtagtaacatttattcttgtctgggtcg 440

                                                                       
Query: 241 catgtggatttacttaccagaacctgtgaagcactcagttctcaatcctaaattgacact 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgtgtggatttacttaccagaacctgtgaagcactcagttctcaatcctaaattgacact 500

                                                                       
Query: 301 ggtagaaaatttaattcatatagtgcttacactagggcaatgaggtaggagtgcgtaggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtagaaaatttaattcatatagtgcttacactagggcaatgaggtaggagtgcgtaggt 560

                                                                     
Query: 361 gggcaggggagcaaactcatagaagcaggtgcaagggggatgggatagggggtatgca 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggcaggggagcaaactcatagaagcaggtgcaagggggatgggatagggggtatgca 618


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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