BAC Information

Click to search

BAC

Clone NameMSMg01-389C03
Chromosome13 (Build37)
Map Location 90,291,764 - 90,292,221
singlet/doubletsinglet
Overlap genenone
Upstream geneEdil3, Hapln1, EG667266, Vcan, LOC100042940, Xrcc4, Tmem167, LOC100043170
Downstream geneLOC624190, EG435376, Rps23, Atg10
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389C03.T7 (MSMg01no389_c03.b1)MSMg01-389C03.TJ (MSMg01no389_c03.g1)
ACCAG491461AG491462
length761779
length of high quality
(start - end)
458 (82 - 539)301 (80 - 380)
definitionCHROMAT_FILE: MSMg01no389_c03.b1 PHD_FILE: MSMg01no389_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:38 2005CHROMAT_FILE: MSMg01no389_c03.g1 PHD_FILE: MSMg01no389_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCATGTCTTTCATAGTTCTACAAAAAGTTTCTTAAGACTGA
AAATGGTGGTGATTTTTTAAAGCACCCCCTTTAACAGGAAAGCAAAATGT
ACAAATGAGAGGAATGTTGTTTGTTATAAAATAAATTTGAAAATTGAGCA
ACTAAATGAATTTACTGTTAAAAGTCTGAATTTCATACTGAATGCCTGCA
TCCGCTTTCTTACTCATTTTCACAGCCCAGTACAAAGGAATACAATAACT
CCACTCCACCCCCTGCACCAAGCTATGGTAATTGTAGAAACTGCAGATAT
TTTATCTCCATAAGGAAAGAGAAAAATATTCCATATATATTTTCAAAATC
TAAGATGTGAGTCTCAGAAAATTAGAGAACAAAATTTTAGATCTCTTTCC
CAAATGGTTTGCTTTGTTTAAACCATTTGGTTAAAGATGAAAATGAAATT
TTAAAAAAGGAAAAAAAGCGGGGAGGGGAGAGAAAGGCCACCTTTCAAAG
AAAGGTGAAGTCATCGATTTTTCTTGAAGTGTTCCACAAGAAAGAAGCAA
GATCTGGTGCTATGTGCACCCCAGGGCTAGCAGCTGGAGGGCAAAAACCA
CCTTTTATCCATGACTGACAAATAATACATAATGAGGAGGGAGAAGCAAT
TCAGGGTTTCAACATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCC
TCTCCCTNTNN
NNNCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGAGACCGTGATAGCATGC
ACAGACAGGCCTGCACAGGTCTATACCAGATAGGGTCCCAACACAAGCCA
CAATCCCTAACCTAGAAGCTATCACCAATTAATAACCATTCATAAAAGAA
AAAATAGTTTTCTCCAATGGAGTCTCACTGAGTATACAAATCACCTTTAA
GGGCAGGCCCCATCCTGAACAGTAGGGATACAACATAAAAGAAAGTCAGT
ATTATTTTTGAAGAGTTTTTGTGTTTTTTGTTTCTGGTTTTGATTTTGTT
TGGTTGTTTTGTTTTGGTTGTTTTTTCTTAACTTGGATTTTTACTTTGAG
CTTCCTCCCTACNTAGGTGCTTTCTACATTATGGCTTTGATTGTGTGACT
TTTTACCAAACCATATGTTTTTTCATTAGATATTTTCTTCATTGACATTC
TAAATGCTATCTACTTTCCTAGTCCCCTCTGCCACATCCATTATTTCCCT
TCCTCTCCACATGGTTCCCCATTTCATCCCACCTCCGTTTTTTGGCCCCT
TGCCATCCCCCCTAAGATGCCCTTATTTTAGCCCCCCTTTTGCCCCCATT
GNTCCCCCCCTCCCCTTGGATTGTATCGCCCCGTTTTTTCTCCCCTTTGT
TTCACCCTGTATGGCCCCCTTTGCTTCCCCCCTCCTCGGCGCTCACTCTG
TGCCCTTGTGCCTCTCCCCCCCTTGGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_c03.b1 MSMg01no389_c03.b1 CHROMAT_FILE:
MSMg01no389_c03.b1 PHD_FILE: MSMg01no389_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:38 2005
         (458 letters)



>mm_chr13_90291564_90292421
          Length = 858

 Score =  847 bits (438), Expect = 0.0
 Identities = 453/458 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaagtttcttaagactgaaaatggtggtgattttttaaagcaccccctttaacaggaaa 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaactttcttaagactgaaaatggtggtgattttttaaagcaccccctttaacaggaaa 260

                                                                       
Query: 61  gcaaaatgtacaaatgagaggaatgttgtttgttataaaataaatttgaaaattgagcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaaaatgtacaaatgagaggaatgttgtttgttataaaataaatttgaaaattgagcaa 320

                                                                       
Query: 121 ctaaatgaatttactgttaaaagtctgaatttcatactgaatgcctgcatccgctttctt 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaaatgaatttactgttaaaagtctgaatttcatactgaatgcctgcatccgctttctt 380

                                                                       
Query: 181 actcattttcacagcccagtacaaaggaatacaataactccactccaccccctgcaccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actcattttcacagcccagtacaaaggaatacaataactccactccaccccctgcaccaa 440

                                                                       
Query: 241 gctatggtaattgtagaaactgcagatattttatctccataaggaaagagaaaaatattc 300
           |||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 441 gctatgctaattgtagaaactgaagacattttatctccataaggaaagagaaaaatattc 500

                                                                       
Query: 301 catatatattttcaaaatctaagatgtgagtctcagaaaattagagaacaaaattttaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catatatattttcaaaatctaagatgtgagtctcagaaaattagagaacaaaattttaga 560

                                                                       
Query: 361 tctctttcccaaatggtttgctttgtttaaaccatttggttaaagatgaaaatgaaattt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctctttcccaaatggtttgctttgtttaaaccatttggttaaagatgaaaatgaaattt 620

                                                 
Query: 421 taaaaaaggaaaaaaagcggggaggggagagaaaggcc 458
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taaaaaaggaaaaaaagcggggaggggagagaaaggcc 658


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)