BAC Information

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BAC

Clone NameMSMg01-389C07
Chromosome13 (Build37)
Map Location 24,257,940 - 24,258,181
singlet/doubletsinglet
Overlap geneLrrc16
Upstream geneV1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn
Downstream geneLOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389C07.T7 (MSMg01no389_c07.b1)MSMg01-389C07.TJ (MSMg01no389_c07.g1)
ACCAG491469AG491470
length752763
length of high quality
(start - end)
279 (77 - 355)249 (77 - 325)
definitionCHROMAT_FILE: MSMg01no389_c07.b1 PHD_FILE: MSMg01no389_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:39 2005CHROMAT_FILE: MSMg01no389_c07.g1 PHD_FILE: MSMg01no389_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCACCCCTCTTAATTTGCGGCGCTAAACGACTACTATTTCCACACATC
CGCGGAATTCTCCAGGTCCTCCTCTTGTGGGGTGTCCACCAGAGAGACTT
CTCAGGCATGGGTTTAAGCCAACAGAAAGTCTTTACTAGCTTGCTGGCAA
CTACACTGAGTGTTCAGGATCCCAGTGTAGACCCAAGCCTTTCTCTGGAT
AAGCTCTTAAGCACAAAAATCGTGTTCTGGGTTGACATACTTCAGTTAAC
AAGAACAGATTAGCCAGAAGCAGAACTACAGAAGCCAAAACTCAAGGTTA
GCACATTTAGAGACTTTCCCAGAACTATGGTCTTTGATGGATTAGGCCTT
TGTTTCACTTTTAGCAGATGATGCTGCCTATGTGCTGGTTTGCAGCTTGA
CTGGTACTCATACCCTACAGTCTGCTGAGTCGGGCGTCTGTTACCCATCT
TGTATTGAGACTTTAATTGCACTTTCCCCCTGGGGCTAGAGACGGTACCA
CCTGCATTTTCTGTGTTGCACAGGACAACACCAGATGCACCTGCCTTCCA
CTGCAGACGCTCACGAGCCTCCTCCTGCAAGCGGACCGCACCTCCCTCCC
CAAGGTTGACCACCCCTTGTTCATTTGGACACCATTCCTGTGCCTTACAA
TCATCCCTCCGACCTCGATACCTTTCCCTCCCCCTGACCGGCCCTCATCC
CCCCCCTCTCCCTTCTCCCTCCCTCCGTCGACTTGACACCTCCCCCCATT
GT
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGTGCAATTAGCCAGGGAGAGT
AACAAAGCAATGCTTGCAGTATGCTTTAGATTTGTATAGAATTATCTAAG
CCGAAAATAAGAATAATCTAAATCAATGTATTTTTGTGAAGGAGGAAAGG
ACCAAAAAATATATGTTAAATACTGAGATCCAGTCATGATCCTCAGTATT
ATAAAGCTTTTTCACAGAAACTTCAGAATGATAGCACTCAGTGCCACCTA
GCAAGGGGAGAAGAGAAACTTCAACTCTCTTTCAGTGTTGGAAAAATTGA
TAACAGAACCTAACCTGTTGGCAAACACCTATAATCCCAGCACATGGGAG
GCTGAAGCAGTAGGATCGTCAGGATTTTGAAGCCAGCCTGGGCTATGTAC
TAAGATTCAAGTCAACCTGAGATATAAATTGAGAACACTGTCAAGAAAAA
AATGGAGGGGTTCAGGGAAGAGAGAGGAAGGAAGGAAGGAAGGACGTACC
GCCCCCCCCTCTTCCCCTCTTTCCCCCCTCTCCCTTTTTCCCATTCCCTT
CCCCTCCGTTCTCCCCCTCTTCTCCCCCCTTTTTCCCCCCCTTTTCCTCC
CCCCCTCTCCTACCCCCACACCCTTTTTTTTTTTTCCCCTATTCCTCCTT
ATTCCCCCTTTTACCCCCCCCCCATGACCCCTCCTTTTCTCTTTTCTCCC
CCCCCTTTCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_c07.g1 MSMg01no389_c07.g1 CHROMAT_FILE:
MSMg01no389_c07.g1 PHD_FILE: MSMg01no389_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:39 2005
         (249 letters)



>mm_chr13_24257740_24258388
          Length = 649

 Score =  424 bits (219), Expect = e-123
 Identities = 237/243 (97%), Gaps = 2/243 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgtgcaattagccagggagagtaacaaagcaatgcttgcagtatgctttagatttgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgtgcaattagccagggagagtaacaaagcaatgcttgcagtatgctttagatttgta 260

                                                                       
Query: 61  tagaattatctaagccgaaaataagaataatctaaatcaatgtatttttgtgaaggagga 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 tagaattatctaagctgaaaataagaataatctaaatcaatgtatttttgtgacggagga 320

                                                                       
Query: 121 aaggaccaaaaaa-tatatgttaaatactgagatccagtcatgatcctcagtattataaa 179
           ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 321 aaggaccaaaaaaatatatgttaaatactgagatccagtcatgatcctcggtattgtaaa 380

                                                                       
Query: 180 gctttttcacagaaacttcagaatgatagcactcagtgccacctagcaaggggagaagag 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 gctttttcacagaaacttcagaatgatagcactcagtgccacctagcaaggggaga-gag 439

              
Query: 240 aaa 242
           |||
Sbjct: 440 aaa 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)