BAC Information

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BAC

Clone NameMSMg01-389E05
Chromosome13 (Build37)
Map Location 87,849,267 - 87,849,704
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC675707, LOC667230, EG435375
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389E05.T7 (MSMg01no389_e05.b1)MSMg01-389E05.TJ (MSMg01no389_e05.g1)
ACCAG491561AG491562
length764768
length of high quality
(start - end)
287 (81 - 367)429 (81 - 509)
definitionCHROMAT_FILE: MSMg01no389_e05.b1 PHD_FILE: MSMg01no389_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:48 2005CHROMAT_FILE: MSMg01no389_e05.g1 PHD_FILE: MSMg01no389_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGACACCAC
CGNGGAATTCACGCATTGCATCCTTCTCAACAGTCTGTGTTACGGGAACA
CTTCATTACCATGACCCGCAGTTCTGGTTCCGGAATGAGGGATCTTCCGT
GCGCCGGTGATGGTAACCGTCCCGGGTTTTTTCATCCCAGGATTTCTCGT
CCCAGGTCTTCTCGTCCCATCCCGAGTTTTCTTGTCCCGGGTTTTTTCGT
CCCGGGTTCTTTCTTCCCGGATTTCGGCACCAACTCTTACACGCTTTCTC
ACGACCAGCCAGGAAGAACACAATTATCCGGAATCTTCTGCGGCAAAAGC
TTTATTGCTTACATCTTCACGAGCCAGAGAGCAAGAAAGCAAGAAAAAGA
ACAAGAAAGCCAGAGAAAGAAAAAGAATGGCGAAACCCTGTCCCTTTTAA
GGAGAATTATCCTCCGCCTAGGACCTATCACTCCCTGATTGGNTGCAGCC
CATCGGCCCAGCTGTCATCACGACAAAGGCCCAACATCTGGCGGGAAAAC
TGCCCCTGCACGTGTGCCCATTATGTTCACTCCTTATAAACCAGTTGCCT
CCCGCCCTCTTGCACCCTGCCAACGCGAGGCCCGCCTCCCCCCCAGACCC
TTGCTCGAACTTCCGACCATCCCTCCAACATTCCCTACCAAACCCTATTG
CACAAACCCCCTCCCCTCCTCCCTATTCCTTCCCTCCTGCCAATTTTCCC
CCTCCCCCCTCTTT
NTTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATATTTCTCCTTGGGAAGC
ACCTAGAATGAAAGATAAAATATTTCTTTAGGTTTCATACTTCCCTCAAG
TGATAAATGAGCTCTCTCTTTGAATTAGAAGACTTTCCTTTGTACTGCGA
TCATAAATGATTCACGTCTCTAATTTCTGAAGAGGACCTTTGGTGTCTGT
ACAGTCAGTGACCTGATTCATTCCTTTCTGAATTCATTAAAGCTGCAAGC
ATTATTATTATTATTATTATTATTATTATTATTTATTACTATTATTATTT
GGTTTTTTCGAGACAGGTTTTCTCTGTGAAGTCTTGACTGTCCTGGAACT
TACTCTGTAGACCAGGATGGCCTCTATCCCGAGCTTTTGTCCCCGCCGGC
AAAAACACACTCAGGACAACCGGAATCTTCTGCGGTAAAGCTTTTATTGC
TTACTTATCAGGAGGGAAGACCCCGAACCGGCAAAATGGTGCTGCTTATA
TAGCCCCGCATTGTGACGTTTTACCGCCCTGACGCGTCGTGACCCCTTCC
TGATCTCGTTGCTCGCCCCTTATTCCCATCATTATGCCTGCCATTACCGC
CACCCGCCTCATCCCTTGACCTTCCTTTTTGTTTTTTGCCTCTTACCCGC
TTGTTCTCCCATTTTCCCTCGCCCGCGTAACCCCCCCCATTACCTTTATT
ATTCGCCCGCTTTGTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_e05.g1 MSMg01no389_e05.g1 CHROMAT_FILE:
MSMg01no389_e05.g1 PHD_FILE: MSMg01no389_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:48 2005
         (429 letters)



>mm_chr13_87849067_87849893
          Length = 827

 Score =  654 bits (338), Expect = 0.0
 Identities = 410/442 (92%), Gaps = 17/442 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatatttctccttgggaagcacctagaatgaaagataaaatatttctttaggtttcatac 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 tatatttctccttgggaagcacctagaatgagagataaaatatttctttaggtttcatac 260

                                                                       
Query: 61  ttccctcaagtgataaatgagctctctctttgaattagaagactttcctttgtactgcga 120
           |||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||
Sbjct: 261 ttccctcaagtgataaatgag--ctctctttgaattaggagactttcctttgtactgcga 318

                                                                       
Query: 121 tcataaatgattcacgtctctaatttctgaagaggacctttggtgtctgtacagtcagtg 180
           ||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 319 tcataaatggttcacgtctctaattcctgaagaggaactttggtgtctgtacagtcagtg 378

                                                                       
Query: 181 acctgattcat-tcctttctgaattcattaaagctgcaagcattattattattattatta 239
           ||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 acctgattcatctc-ttgctgaattcattaaagctgcaagcattattattattattatta 437

                                                                       
Query: 240 ttattattattatt------------tattactattattatttggttttttcgagacagg 287
           ||||||||||||||            ||||||| |||||||||||||||| | |||||||
Sbjct: 438 ttattattattattattattattaattattactgttattatttggttttt-caagacagg 496

                                                                       
Query: 288 ttttctctgtgaagtcttgactgtcctggaacttactctgtagaccaggatggcctctat 347
            ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gtttctctatgaagtcttgactgtcctggaacttactctgtagaccaggatggcctctat 556

                                                                       
Query: 348 cccgagcttttgtccccgccggcaaaaacacactcaggacaaccggaatcttctgcggta 407
           |||||||||||||||| |||||||| |||||||||||||||||| ||||||||||| | |
Sbjct: 557 cccgagcttttgtcccagccggcaagaacacactcaggacaaccagaatcttctgcagca 616

                                 
Query: 408 aagcttttattgcttacttatc 429
           ||||||||||||||||||||||
Sbjct: 617 aagcttttattgcttacttatc 638


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 827
Length adjustment: 9
Effective length of query: 420
Effective length of database: 818
Effective search space:   343560
Effective search space used:   343560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)