Query= MSMg01no389_f13.b1 MSMg01no389_f13.b1 CHROMAT_FILE:
MSMg01no389_f13.b1 PHD_FILE: MSMg01no389_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:55 2005
(374 letters)
>mm_chr13_30342591_30343364
Length = 774
Score = 663 bits (343), Expect = 0.0
Identities = 367/375 (97%), Gaps = 2/375 (0%)
Strand = Plus / Plus
Query: 1 agtgacctttaagcacaggaaggcgtccagttactgagtcgtttgacacactttgcagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgacctttaagcacaggaaggcgtccagttactgagtcgtttgacacactttgcagtg 260
Query: 61 ctgggaccttatgcctgctaggcaaatcttcaatcactgaaccacacctgcagatcccta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgggaccttatgcctgctaggcaaatcttcaatcactgaaccacacctgcagatcccta 320
Query: 121 gaaatgttcttaataatcaaaagggctatacctcattccagttttggttaacatcgacaa 180
|||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 321 gaaatgttcttaataaccaaaagggttatacctcattccagtttt-gttaacatcgacaa 379
Query: 181 gagaaggg-aaaaaccactggataagatagagaatatagaaggatctgcaattgtgctgg 239
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gagaagggaaaaaaccactggataagatagagaatatagaaggatctgcaattgtgctgg 439
Query: 240 ctaggatgttctctgtgtatttgaaggttgctatgcacccattgtgtacactttcaagaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctaggatgttctctgtgtatttgaaggttgctatgcacccattgtgtacactttcaagaa 499
Query: 300 tgtctataaggcaaaagatcttgggatataaaggtaatgaatgcctgctacatcctgcat 359
|||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 500 tgtctataaggcaagagatcttggaatatggaggtaatgaatgcctgctacatcctgcat 559
Query: 360 ggcttggtactggaa 374
|||||||||||||||
Sbjct: 560 ggcttggtactggaa 574
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space: 279225
Effective search space used: 279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no389_f13.g1 MSMg01no389_f13.g1 CHROMAT_FILE:
MSMg01no389_f13.g1 PHD_FILE: MSMg01no389_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:55 2005
(485 letters)
>mm_chr13_30541598_30542483
Length = 886
Score = 648 bits (335), Expect = 0.0
Identities = 386/405 (95%), Gaps = 7/405 (1%)
Strand = Plus / Minus
Query: 1 cacagttactcaaacagactaggaattttcaaacatctattacttagaccatgctttgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 cacagttactcaaacagactaggaattttcaaacatctattacttagaccatgctttgtc 345
Query: 61 agctgctcaaaacacttctgaagcgcagatggtgaaatcctttattccttgaacgtcaag 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 344 agctgctcaaaacacttctgaagcgcagatggtgaaatcatttattccttgaacgtcaag 285
Query: 121 tacattgttgctgttttatttttgtttctgccttgagggttgggtacccct-cccccttc 179
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 284 tacattgttgctgttttatttttgtttctgccttgagggttgggtacccctccccccttc 225
Query: 180 ctctctttcttttgtttgttcatattccttctttccttctttccttctttccttctttcc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 ctctctttcttttgtttgttcatattccttctttccttctttccttctttccttctttcc 165
Query: 240 ttctttttttctttccttctttccttctttccttc-ttccttc----cttccttccttcc 294
||||| ||||||||||||||||||||||||||| ||||||| |||| |||||| |
Sbjct: 164 ttcttaccttctttccttctttccttctttccttctttccttcttttcttctttcctt-c 106
Query: 295 ttccttccttccttccttccttccttccttccttcctttctttctttctttctttctttc 354
|||||||||||||| ||| ||| ||| ||| ||| |||||||||||||||||||||||||
Sbjct: 105 ttccttccttcctttctttctttctttctttctttctttctttctttctttctttctttc 46
Query: 355 tttctttttttcttcctttcttttctctttttgagacagggtctt 399
|| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45 ttcctttttttcttcctttcttttctctttttgagacagggtctt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 886
Length adjustment: 10
Effective length of query: 475
Effective length of database: 876
Effective search space: 416100
Effective search space used: 416100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
