BAC Information

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BAC

Clone NameMSMg01-390P07
Chromosome13 (Build37)
Map Location 71,574,396 - 71,764,283
singlet/doubletdoublet
Overlap geneLOC100042360
Upstream geneBC018507, EG620473, Adamts16, 8030423J24Rik, LOC627230
Downstream geneIrx1, LOC100042828, LOC100042832, LOC100042836
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390P07.T7 (MSMg01no390_p07.b1)MSMg01-390P07.TJ (MSMg01no390_p07.g1)
ACCAG492844AG492845
length768772
length of high quality
(start - end)
138 (181 - 318)246 (77 - 322)
definitionCHROMAT_FILE: MSMg01no390_p07.b1 PHD_FILE: MSMg01no390_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:01 2005CHROMAT_FILE: MSMg01no390_p07.g1 PHD_FILE: MSMg01no390_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,764,147 - 71,764,283)(71,574,396 - 71,574,641)
sequence
NAACTCTAAATTTGCCGGCGGTAAAAAGAANACCATATCCACCAACACCG
CGGAANTCTCTTTATTTCCGCCAACATCCCAGAGTGACTGGCAAACAATC
TCTGTTTTCTGGGGAAAAGGATAGGCAATATAATCTTAAAGCAGATTGTC
CCTCTAAATGTGCCCTCCAGACCTCTGCTCAAAGGGCTCCTTTCCATTTT
CTGTCCTCTGTCGCAGGTCACATCTAGAATCTCCCTCTTCCAGAGGTGAC
ATGCCATTCAGAAATCTCTGCTTACAAAACTAGAAGGCTCTGTAATGAGA
TAACACGTTCTGTTAGAAAGAATCCATTCTTCATGACCAGGACAAGTCTG
AACAGCTGTGGATGTTTGTGAACATTCCCAGAATTCCACTGAGTACATGG
ACCAGATTTTTTTAAATCTCCCACCACATATTTTCTTCACTTACATTTCA
AATGCTATCCCCAAAGTCCCCTATACCCTCCCCCCTGCCCTACTCCCCCA
ACCTACCCACTCTCACTTCCTGCCCCTGGTGTCCCCCTGTACTGCCCTAT
ACAACGTCCGCAACACCCACCCCCCCTTTCTTCCCACTGATCGCCCCAAC
ATCGCCCCCCTCTGCTACCTACGTTCTCTCCCCCCCCCGACCCTCTGCCT
ACTCGCCCCCCCCCTTCTCTCCTCTCTTCTTCATCCCCCTCGCACTCCCT
CTTCCTCTCCCCCCAATACTTCCCGAACTCCACCTCAACCCCCTCCCTTC
CCAACGTCCTCTCTCCCC
NNCCCGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATCAGGTGGCAACCAATGCTAGAG
GGTTAGAATAAACTGGATCCTGCCTGTGTGGTGATATGCTTTCTCATTGT
GTAGAAAGGCTGTTCAATTATCACCTTTAGTTTTCCTTCTGTAGTTTGTT
TTTGAGCCTTCCTGTGGCGTGTAACTCTTACAGCCTTTAGAACGTATGGG
TAGAATAGACATATGAGTGTATGTCTTGTGTGTGACTGGCCTTAGCCTAG
GTATACACGGGACAGGAACAGATCTTTTAAGCAAATGCCTTGTTTTTTTT
TTTTTCATAAAAGTGGTGGACAGTGCCCCTGAAGCTCAGGCATACCCTAG
GATCTGGAAATCATATGCCCCCACAGTTTTAAGTTGGATTAGTAGAGTGG
GTCTTATAAATTGAGTACAAGAGCTGATGAAATTTGCATGAAGTTATGTG
CAGGACGATATTTACCCCACCTCCTCAATCTCCAAGGAATCTTCCTAAAA
GGCCTCGGTGGCTTGACTCCCTTGCCCTATTTCCTCTTTATACACTCCCG
CCCTTACCCAACGCTCACCCTTCTCTCTATTACTACCTCACACCCCCCTC
TCCCTCTCTTCATCTTCTTTTTCTCTTATTTATCCTCTTCCTCATGGTCC
TCTACTTCTTCCCCATCTCTCTTCTCTCTCTTCTTTCATTACTTCTCCTC
TTTCCCCCCCCGTTTCTTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_p07.b1 MSMg01no390_p07.b1 CHROMAT_FILE:
MSMg01no390_p07.b1 PHD_FILE: MSMg01no390_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:01 2005
         (138 letters)



>mm_chr13_71763946_71764483
          Length = 538

 Score =  242 bits (125), Expect = 7e-69
 Identities = 134/137 (97%)
 Strand = Plus / Minus

                                                                       
Query: 2   aagggctcctttccattttctgtcctctgtcgcaggtcacatctagaatctccctcttcc 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 aagggctcctttccattttctgtcctctgtcgcaggtcacatctagaatctccctcttcc 279

                                                                       
Query: 62  agaggtgacatgccattcagaaatctctgcttacaaaactagaaggctctgtaatgagat 121
           ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 278 agaggtgacatgccagtcagaaatctctgcttacaaaactagaaggttctgtaatgagct 219

                            
Query: 122 aacacgttctgttagaa 138
           |||||||||||||||||
Sbjct: 218 aacacgttctgttagaa 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 138
Length of database: 538
Length adjustment: 8
Effective length of query: 130
Effective length of database: 530
Effective search space:    68900
Effective search space used:    68900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no390_p07.g1 MSMg01no390_p07.g1 CHROMAT_FILE:
MSMg01no390_p07.g1 PHD_FILE: MSMg01no390_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:01 2005
         (246 letters)



>mm_chr13_71574196_71574841
          Length = 646

 Score =  468 bits (242), Expect = e-136
 Identities = 245/246 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcaggtggcaaccaatgctagagggttagaataaactggatcctgcctgtgtggtgata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcaggtggcaaccaatgctagagggttagaataaactggatcctgcctgtgtggtgata 260

                                                                       
Query: 61  tgctttctcattgtgtagaaaggctgttcaattatcacctttagttttccttctgtagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 tgctttctcattgtgtagaaaggctgttcaattatcacctttagttttccttctgcagtt 320

                                                                       
Query: 121 tgtttttgagccttcctgtggcgtgtaactcttacagcctttagaacgtatgggtagaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtttttgagccttcctgtggcgtgtaactcttacagcctttagaacgtatgggtagaat 380

                                                                       
Query: 181 agacatatgagtgtatgtcttgtgtgtgactggccttagcctaggtatacacgggacagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agacatatgagtgtatgtcttgtgtgtgactggccttagcctaggtatacacgggacagg 440

                 
Query: 241 aacaga 246
           ||||||
Sbjct: 441 aacaga 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)