BAC Information

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BAC

Clone NameMSMg01-392C20
Chromosome13 (Build37)
Map Location 22,484,795 - 22,485,340
singlet/doubletsinglet
Overlap genenone
Upstream geneZkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4
Downstream geneV1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392C20.T7 (MSMg01no392_c20.b1)MSMg01-392C20.TJ (MSMg01no392_c20.g1)
ACCAG493772AG493773
length771786
length of high quality
(start - end)
551 (50 - 600)102 (162 - 263)
definitionCHROMAT_FILE: MSMg01no392_c20.b1 PHD_FILE: MSMg01no392_c20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:37 2005CHROMAT_FILE: MSMg01no392_c20.g1 PHD_FILE: MSMg01no392_c20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAATGTTTTTATAGAAATTGTTGACACATCAAAATGCAGAT
GTGAAAGGAATATGGAACAAAAGAAGGTAGATGTGGAAGATAAAGTTACT
AAATGAGAGACATGTTGCAGCTGTTGACTAGCTGTTTCCCAGAGTCTTTG
TGTGATGTGGGGAAGACAGCCAGGTTTAGCATGAACCTCAGGCTTTGGGA
ATTGGGTGGGGAAATATGATGAAAAGGAATGAGAAACAGAGGAAGAAATT
TTGGCTTGGGAAACTTGGAATTCAAATCAATAATTCTCAGAGGTAACAAG
GATAATTCATGCATGTTGAAACAAACACACACAAACACACAGTAACACAC
AAATACATACACAAACAAGCTTGAAGAAGTCAATTTTGCTAGTAAATCTC
AAAAATAATCTCCTTTAAATTTTTATTTGTTATTTTATTTTATTTATATT
TTAAATAATATCTCCCTTCCCAGTTTCCCCTCCACAAACCCCCTATCCCC
TCCCTCATCCCCCTGCTTCTATGAAGATACTCCCCCACCCACCCACCCAT
CCACCCACTCCTGTCTCAGTGCTCTAGCATTCCCCCTACCCTAAATCATT
TGATTTTACCCTTCCCTTGACGCCCGATAATTTCACTCCTCTGCTTCTTA
TCTCCTCTCTACCTTTTTTTCCTCCCCTTGTCCCATCCTTGTTTGTGTGG
TTCCACTCCTCGCCCTCTTCG
TGATGTGCCTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGGGAAG
CACCTGAAAAAATGTTCAATATCCTTAATCATCAGGGAAATGCAAATCAT
AACAATCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAA
ATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTC
CTCCATTGTTGGTGGTATTGCATGCTTGTACAACTACTCTGGAAATCAGC
CTGGCGGTTCCTCTGAAAACTGGACATAGCACTACTGGAGGATCCAGCAA
TACCTCTCCTGGGCATATATCCAGAAGATGCCCCTACTGGTATGAAGGAC
TCTTGCTCCACTATGTTCCTACCTGCCCTATTTATAATACCTCTATGCTG
TATAGATTCCCTATTCTCCCCTCTCATACCTTTTGTTTTCTCAAATATGT
GCCACATCTACACAATGTAGTTACTATCCGCTTGCTATAAATAATCCTTC
CTCCTATTCTCTCTTCCTACTCGCCCGTTTCCTTTATCTTCCCCCTTCTT
TTATTTATTCTTCTCCTTTTTCCCTCCCGCTCCTCATATTTTTACGCTCT
TCTAACTTCTCCCTTCCCTTTTTCTCCCTCTTCCTTTACTTACCCCCCCC
CTTTCTATTTTTTTCCCTTCCTTTATCCTTATTTATTTTTCCCATATTTC
TTCACTTTTCTCCCCCCCGTTTTATCACTCAATTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_c20.b1 MSMg01no392_c20.b1 CHROMAT_FILE:
MSMg01no392_c20.b1 PHD_FILE: MSMg01no392_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:37 2005
         (551 letters)



>mm_chr13_22484591_22485541
          Length = 951

 Score = 1040 bits (538), Expect = 0.0
 Identities = 544/546 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaatgtttttatagaaattgttgacacatcaaaatgcagatgtgaaaggaatat 64
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaatgtcattatagaaattgttgacacatcaaaatgcagatgtgaaaggaatat 264

                                                                       
Query: 65  ggaacaaaagaaggtagatgtggaagataaagttactaaatgagagacatgttgcagctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggaacaaaagaaggtagatgtggaagataaagttactaaatgagagacatgttgcagctg 324

                                                                       
Query: 125 ttgactagctgtttcccagagtctttgtgtgatgtggggaagacagccaggtttagcatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgactagctgtttcccagagtctttgtgtgatgtggggaagacagccaggtttagcatg 384

                                                                       
Query: 185 aacctcaggctttgggaattgggtggggaaatatgatgaaaaggaatgagaaacagagga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aacctcaggctttgggaattgggtggggaaatatgatgaaaaggaatgagaaacagagga 444

                                                                       
Query: 245 agaaattttggcttgggaaacttggaattcaaatcaataattctcagaggtaacaaggat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agaaattttggcttgggaaacttggaattcaaatcaataattctcagaggtaacaaggat 504

                                                                       
Query: 305 aattcatgcatgttgaaacaaacacacacaaacacacagtaacacacaaatacatacaca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aattcatgcatgttgaaacaaacacacacaaacacacagtaacacacaaatacatacaca 564

                                                                       
Query: 365 aacaagcttgaagaagtcaattttgctagtaaatctcaaaaataatctcctttaaatttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aacaagcttgaagaagtcaattttgctagtaaatctcaaaaataatctcctttaaatttt 624

                                                                       
Query: 425 tatttgttattttattttatttatattttaaataatatctcccttcccagtttcccctcc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tatttgttattttattttatttatattttaaataatatctcccttcccagtttcccctcc 684

                                                                       
Query: 485 acaaaccccctatcccctccctcatccccctgcttctatgaagatactcccccacccacc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acaaaccccctatcccctccctcatccccctgcttctatgaagatactcccccacccacc 744

                 
Query: 545 caccca 550
           ||||||
Sbjct: 745 caccca 750


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space:   509081
Effective search space used:   509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)