Query= MSMg01no392_f06.b1 MSMg01no392_f06.b1 CHROMAT_FILE:
MSMg01no392_f06.b1 PHD_FILE: MSMg01no392_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:49 2005
(525 letters)
>mm_chr13_81711097_81712020
Length = 924
Score = 368 bits (190), Expect = e-106
Identities = 373/524 (71%), Gaps = 144/524 (27%)
Strand = Plus / Minus
Query: 3 gaattctcttgtgttcatgagggtagcagcgagccagttgaaacattaggtcacacactc 62
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 gaattctcttgtgttcacgagggtagcagcgagccagttgaaacattaggtcacacactc 848
Query: 63 cactctcttgtgc-ttactttcaagaatgcagaggttaaacttttatcacgtgatgtaaa 121
||||||||||| | |||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 847 cactctcttgt-ctttactttcaagaatgccgaggttaaacttttatcacgtgatttaaa 789
Query: 122 gaaaagattacccttcattcttgttacatggcatttaaagaataatttttatttcttttt 181
||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 788 gaaaagattgcccttcattcttgttacatggcatttaaagaat----------------- 746
Query: 182 ttaaaatattttttattattacatattttcctcaattacatttagaatgctatccccaaa 241
||||| ||||| |||
Sbjct: 745 ---aaata----------------atttt---------------------tat------- 733
Query: 242 gcccccataccctccccccccacttccctacccacccattcccattttttggccctggca 301
Sbjct: 733 ------------------------------------------------------------ 733
Query: 302 ttcccctgtactggggcatataaagaataaaaaaatttacatgaatccatgtgttacctt 361
||| ||||| |||||||||| ||||||||||||| |||||||||
Sbjct: 732 ttc---------------tataa--aataaaaaaa-ttacatgaatccacatgttacctt 691
Query: 362 ctcagccattgtaataagaactacccagcatttctctgaatgcacttcataaatagtaca 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 ctcagccattgtaataagaactacccagcatttctctgaatgcacttcataaatagtaca 631
Query: 422 gcctcagggcctctggtatgttttgattagttacttatttagttagttataaaattcaga 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gcctcagggcctctggtatgttttgattagttacttatttagttagttataaaattcaga 571
Query: 482 aaatacttcgtaaagaaaaaatgaaatctgattagttaccttcc 525
|||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 570 aaatacttcgtaaagaaaaaataaaatctgattagttaccttcc 527
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 924
Length adjustment: 10
Effective length of query: 515
Effective length of database: 914
Effective search space: 470710
Effective search space used: 470710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no392_f06.g1 MSMg01no392_f06.g1 CHROMAT_FILE:
MSMg01no392_f06.g1 PHD_FILE: MSMg01no392_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:49 2005
(402 letters)
>mm_chr13_81496441_81497242
Length = 802
Score = 731 bits (378), Expect = 0.0
Identities = 400/414 (96%), Gaps = 12/414 (2%)
Strand = Plus / Plus
Query: 1 tagagtcgaccagtagaaaggctactggttgaaaagtgtcacaaaagagagccatgtcct 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 tagagtcgaccagtggaaaggctactggttgaaaagtgtcacaaaagagagccatgtcct 248
Query: 61 atcaattaaaagaaaggactggttatgggcataatgcagcaaatggctaattgtaaaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 atcaattaaaagaaaggactggttatgggcataatgcagcaaatggctaattgtaaaaac 308
Query: 121 ctgtatttgttccagggaaatagaaa----atccttccccaggatattgtattgcacagt 176
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 309 ctgtaattgttccagggaaatagaaagaaaatccttccccaggatattgtattgcacagt 368
Query: 177 cctataaatttagatcaattgtaattacacacattaagtgcctttcatagtcaacaacac 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 cctataaatttagatcaattgtaattacacacattaagtgcctttcatagtcaacaacac 428
Query: 237 tgagtgcttaaatacatgttaggatttaaataaatacacacacacacacacacacacaca 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tgagtgcttaaatacatgttaggatttaaataaatacacacacacacacacacacacaca 488
Query: 297 cacaca--------aatggaacattctgaggtcccatttcatggttactgaacaagagtc 348
|||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 cacacacacacacaaatggaacattctgaggtcccatttcatggttactgaacaagagtc 548
Query: 349 accatctagcttcctaaaagctctgcaaggcagactttcttactcttttgattg 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 accatctagcttcctaaaagctctgcaaggcagactttcttactcttttgattg 602
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space: 311649
Effective search space used: 311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
