BAC Information

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BAC

Clone NameMSMg01-392K07
Chromosome13 (Build37)
Map Location 54,591,231 - 54,591,587
singlet/doubletsinglet
Overlap geneLOC100040543
Upstream geneEG432760, E130119H09Rik, Drd1a, Sfxn1, Hrh2, LOC100040535, Cplx2, Thoc3
Downstream gene4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17, Unc5a, Hk3, Uimc1, LOC622707, Zfp346, Fgfr4, Nsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392K07.T7 (MSMg01no392_k07.b1)MSMg01-392K07.TJ (MSMg01no392_k07.g1)
ACCAG494130AG494131
length766663
length of high quality
(start - end)
414 (82 - 495)---
definitionCHROMAT_FILE: MSMg01no392_k07.b1 PHD_FILE: MSMg01no392_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:14 2005CHROMAT_FILE: MSMg01no392_k07.g1 PHD_FILE: MSMg01no392_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTCATTAACGAGAGTAGATTACAAAAAGACAAGAGCCTGT
GACTGAACTTGGAGGGTCCCAACATTTAATGGCCTGGGTAGGAGAAAGGG
CCAGCAAAGGAATCTAGGAAGGAAGGTACGGTAGGTAGAAGCTGGTGCCA
TAAGAAAAGGTTGCTGATCAAAGTATTCTCTATGTTAAGTGACTGGAGGC
CAGATTCTTAGCCATCATGAAAAACAGGTGCTTCTGGGCTTGCTCAGCTC
AGGACTGTAATGAGCCAAGTGTTTTTTACCTAAAAGAATTAGTCATAGTG
GTTTGGTGACCTTGGCTGGTCCTCCATAAAGACTTTTAGCTGAAAGAACA
ACAACAACAACAACAAAACACAATCTTCGTGGCATGTTTTTTTTTGTTGT
TTGTTTTTTTTTTCAAGATTTATTTATTTATTTATTATATGTAAGTACAC
TGTAGCTGTCTTCAGACGCACCAGAAGAGGGCCTCCGGCCTCCTTACAGG
TGGTTGCGAGCCCCCATGTGGTTGCTGGGATTTGAACTTTCGCCCTCCCG
CACAAGCATCTCCCGCTCCTACCCACTGACGCCTCTCTCCCCCCCCATTG
GGGCCCGTTTTCCCGGATAGCCTTACCTCCAAACCANCCCCCCCGCCTAT
CCCGTTCCCTCCCCTTACTCTGCCCCCACCCCTCACCCCCTGGAACCCTT
TCCCGCGCCCCTGCTG
ACCCCCCACCTCCTCGCCCCTCCCCCCCCCCACCAATATACCCTACCACC
CCACATACCCACGTTTCCACAGAGAAGCAAGGGGCGGGAAGAGAAAAAAA
CGGAACACGCGGGCGGCACAACAAGCCCGAACGCCAGCGTGGCCTGCGGC
TCCCCACATCCACAAACCTAGAGTCGGGTGCGTAGCAACTTCGCGAGCAG
AAACGAAGGCGCACACCCGTCTGTACCCCATCACCCCCCATCCGGGACTC
CCGTCCACGGCGCCGCCCCGCGACCCTGCCCACCTACCTAACAGGCTTGC
ACGGCCCAGTACCCCGACTATNNNNNNCGGAAAACTTTTNCCGGTAAGGA
TAATGGGTAGGCCTGGGGGGGCCGCCCTGGGCCGTCACNCCACTTTAAGG
GGAAACCTAAAAAAAAAGGATTCGCGGGACATACAAAGGGGCCCTGGGGG
GTAAAGGGGCTTTGGGGGAAAAAAAACAGGGGGTTTTCCGGAAAAGGGGT
TTAAAAAAGTTTTGGGGCCCAAAAAAGGGGCCCCCTTTAAAAAAGGGGAA
AAGGGGGGGAAAAAAAAAAAAAAAACCCCGGAAAAAATAAAAAAAAGAAA
AAGGGGGTTTTAAAAAGAGAGGCCTTTGGGGGGGGGGGCAAAAAAAAAAA
AGGGGGTGGGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_k07.b1 MSMg01no392_k07.b1 CHROMAT_FILE:
MSMg01no392_k07.b1 PHD_FILE: MSMg01no392_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:14 2005
         (414 letters)



>mm_chr13_54591031_54591843
          Length = 813

 Score =  623 bits (322), Expect = 0.0
 Identities = 349/358 (97%), Gaps = 2/358 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaaagacaagagcctgtgactgaacttggagggtcccaacatttaatggcctgggtag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 caaaaagacaagagcctgtgactgaacttggagggtcccaacatttaatggcctgggtgg 260

                                                                       
Query: 61  gagaaagggccagcaaaggaatctaggaaggaaggtacggtaggtagaagctggtgccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagaaagggccagcaaaggaatctaggaaggaaggtacggtaggtagaagctggtgccat 320

                                                                       
Query: 121 aagaaaaggttgctgatcaaagtattctctatgttaagtgactggaggccagattcttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagaaaaggttgctgatcaaagtattctctatgttaagtgactggaggccagattcttag 380

                                                                       
Query: 181 ccatcatgaaaaacaggtgcttctgggcttgctcagctcaggactgtaatgagccaagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccatcatgaaaaacaggtgcttctgggcttgctcagctcaggactgtaatgagccaagtg 440

                                                                       
Query: 241 ttttttacctaaaagaattagtcatagtggtttggtgaccttggctggtcctccataaag 300
           |   |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 taagttacctaaaagaattagtcatagtggtttggtgaccttggctggtcctccatgaag 500

                                                                     
Query: 301 acttttagctgaaag-aacaacaacaacaacaacaaaacacaatcttcgtggcatgtt 357
           |||||||||| |||| ||||||||||||||||||| || |||||||||||||||||||
Sbjct: 501 acttttagct-aaaggaacaacaacaacaacaacagaagacaatcttcgtggcatgtt 557


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 813
Length adjustment: 9
Effective length of query: 405
Effective length of database: 804
Effective search space:   325620
Effective search space used:   325620
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)