Query= MSMg01no393_d08.b1 MSMg01no393_d08.b1 CHROMAT_FILE:
MSMg01no393_d08.b1 PHD_FILE: MSMg01no393_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:03 2005
(504 letters)
>mm_chr18_40467472_40468374
Length = 903
Score = 369 bits (191), Expect = e-106
Identities = 236/251 (94%), Gaps = 1/251 (0%)
Strand = Plus / Minus
Query: 5 gaattctctgaactctctgtcctttcaggtccacatttgctctggctctggcaactgact 64
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 454 gaattctctgaactcactgtcctttcaggtccacctttgctctggctctggcaactgact 395
Query: 65 gaaccaaacaattaggctcatacctagaactttggaaatggtaatggagttgataacaca 124
||||||||||| |||||||||||||||| ||| | |||||||||||||||||| ||||||
Sbjct: 394 gaaccaaacaa-taggctcatacctagatcttcgaaaatggtaatggagttgaaaacaca 336
Query: 125 ccctaacagaaagaggaatgctccactcactagtacactttcactagaagcctcaccctg 184
| |||||||||||||||| |||||||||||||| | |||||||||||||||||| |||||
Sbjct: 335 ctctaacagaaagaggaaggctccactcactagaagactttcactagaagcctcgccctg 276
Query: 185 tcagcagtttaggaatttgtaaagccaatctggacaatatttaaatggtttggaatttct 244
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 275 ccagcagtttaggaatttgtaaagccaatctggacaatatttacatgatttggaatttct 216
Query: 245 acttcatgttt 255
|||||||||||
Sbjct: 215 acttcatgttt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 903
Length adjustment: 10
Effective length of query: 494
Effective length of database: 893
Effective search space: 441142
Effective search space used: 441142
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no393_d08.g1 MSMg01no393_d08.g1 CHROMAT_FILE:
MSMg01no393_d08.g1 PHD_FILE: MSMg01no393_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:03 2005
(533 letters)
>mm_chr13_65476662_65477594
Length = 933
Score = 493 bits (255), Expect = e-143
Identities = 464/551 (84%), Gaps = 41/551 (7%)
Strand = Plus / Plus
Query: 3 taggaacatgtcctt--gttgtatacttatcctgctcccattaattggggtactctactg 60
||||||||||| ||| | ||||||||||||||||| |||||| ||| ||||||| ||||
Sbjct: 182 taggaacatgt-cttcag-tgtatacttatcctgcttccattagttgtggtactcaactg 239
Query: 61 tggcaagggtacttgc-------------catgtcttaacttgaa--aaccagaaagtca 105
||||| ||| |||||| ||||||||||||| | |||| | ||||||
Sbjct: 240 tggcagggggacttgccttgtctaacattcatgtcttaactt--accaacccggaagtca 297
Query: 106 gttgtgcatgtacaagtctctttcttccaagtaagatgtcagttcccagggaggcctcga 165
|||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 298 gttgcccacatacaagtctctttcttccaagtaagatgtcagttcccagggaggccttgg 357
Query: 166 gaacttatactttactcact-cacaccctactcaaaatagaagtctggttcgaagtagtc 224
||||||| || |||||| | |||||||||||||||||||||||||| || |||||||
Sbjct: 358 gaacttacacattactc-gtgcacaccctactcaaaatagaagtctgattaaaagtagtt 416
Query: 225 tctgcactgaatcggtggtgcgggtgtctctcttttg-ttggggtgcgggggtccgtccc 283
||||||||||||| ||||||||||||||||| || |||||| | |||||||| || |
Sbjct: 417 tctgcactgaatc---cgtgcgggtgtctctcttgtgtttgggg-g-gggggtccatctc 471
Query: 284 cagggcagcttctaagagcaaatgccagaaaagtgtatacatgggtttgtgcaggaaatg 343
||||||||||| ||||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct: 472 cagggcagcttataagagcaaatgccataaaagcatatacatgggtgggtgcaggaaatg 531
Query: 344 ctgctgggtggtcagtttgggtccaagcctattgcagataactatagaacaaaggaagc- 402
|| || | ||||||||| || ||||||||||||||||||||||||||||||| ||||||
Sbjct: 532 ctccttgatggtcagttcggatccaagcctattgcagataactatagaacaagggaagca 591
Query: 403 -ttcta-----ttc-----tgattggtttccgaggacacatccaacaagaatatgtagtc 451
||||| ||| ||||||||||| ||||||||| ||||| |||||||||| ||
Sbjct: 592 gttctattggcttctatcgtgattggtttctgaggacacaaccaacgagaatatgtaatc 651
Query: 452 aattctggcaataatggcagaaacaagctatgagaaagtgtccttataatagtagttaac 511
||||| |||| ||| |||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 652 aattcgggcagtaacggcagaaacaaggtatgagacagtgtccttataatagtagttaac 711
Query: 512 agcacaaaatg 522
|||||||||||
Sbjct: 712 agcacaaaatg 722
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
