Query= MSMg01no393_g05.b1 MSMg01no393_g05.b1 CHROMAT_FILE:
MSMg01no393_g05.b1 PHD_FILE: MSMg01no393_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:18 2005
(424 letters)
>mm_chr13_22027935_22028758
Length = 824
Score = 553 bits (286), Expect = e-162
Identities = 297/304 (97%), Gaps = 6/304 (1%)
Strand = Plus / Minus
Query: 1 cattggacgacttgcaaatctagttccaggggaatccaatgttgtgttttgaacattgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 cattggacgacttgcaaatctagttccaggggaatccaatgttgtgttttgaacattgtg 245
Query: 61 ggcaactgcgctgatgtcataactcctccgagatacatacatgcataaaaataattaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ggcaactgcgctgatgtcataactcctccgagatacatacatgcataaaaataattaaaa 185
Query: 121 ataaaaaggaagatctttaaaagcagatattcaagcgtaactctagcacctaaggggggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 ataaaaaggaagatctttaaaagcagatattcaagcgtaactctagcacctaaggggggc 125
Query: 181 agaaaaaaaa------aaaaaaaaaaaagactgctgtgatctcttaaccactctccagcc 234
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 agaaaaaaaagaaaaaaaaaaaaaaaaagactgctgtgatctcttaaccactctccagcc 65
Query: 235 cctattacagtttttggagacaaaagcttgttgtgcagtccaagctggtcttgatctcga 294
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 cctattacagtctttggagacaaaagcttgttgtgcagtccaagctggtcttgatctcga 5
Query: 295 tata 298
||||
Sbjct: 4 tata 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space: 338225
Effective search space used: 338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no393_g05.g1 MSMg01no393_g05.g1 CHROMAT_FILE:
MSMg01no393_g05.g1 PHD_FILE: MSMg01no393_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:18 2005
(455 letters)
>mm_chr13_21811965_21812819
Length = 855
Score = 841 bits (435), Expect = 0.0
Identities = 450/455 (98%)
Strand = Plus / Plus
Query: 1 agagatttgcctgattctgtgtcctgagcactagaattagagatgtagggcacacgtgca 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 201 agagatttgcctgattctgtgtcctgagcactagaattagagatgtggggcacacatgca 260
Query: 61 aaatgttaacagcttatgagtcgctaacataacagcaaggtacaacagctaactacaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatgttaacagcttatgagtcgctaacataacagcaaggtacaacagctaactacaaag 320
Query: 121 attgataacaggaaaataaagctaacaacaatgttttctaaatttttatttaagtatata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attgataacaggaaaataaagctaacaacaatgttttctaaatttttatttaagtatata 380
Query: 181 cccacatgaaacagcaacctatcatggactttggatttctcaaactcagcatttcccacg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccacatgaaacagcaacctatcatggactttggatttctcaaactcagcatttcccaca 440
Query: 241 gcctcaaacagcagcgatggtatttacgggtataaattactctatacctgtcttgtgaaa 300
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 gcctcaaacagcagcgatggtatttacaggtataaattactctatacctgtcttgtgaaa 500
Query: 301 tttcatttcggtgctatctacagccgccctatcatatatatgaatactgggtcactacag 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttcatttccgtgctatctacagccgccctatcatatatatgaatactgggtcactacag 560
Query: 361 aaaatagaagttctgtttctcagggttagggtagctcatcaccctttccctactttttaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaatagaagttctgtttctcagggttagggtagctcatcaccctttccctactttttaa 620
Query: 421 ttccagcttcactttattcccatgctgagtaagaa 455
|||||||||||||||||||||||||||||||||||
Sbjct: 621 ttccagcttcactttattcccatgctgagtaagaa 655
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space: 376025
Effective search space used: 376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
