BAC Information

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BAC

Clone NameMSMg01-395D23
Chromosome13 (Build37)
Map Location 64,824,993 - 64,825,403
singlet/doubletsinglet
Overlap genenone
Upstream geneC030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470
Downstream geneCntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395D23.T7 (MSMg01no395_d23.b1)MSMg01-395D23.TJ (MSMg01no395_d23.g1)
ACCAG496111AG496112
length794805
length of high quality
(start - end)		412 (44 - 455)411 (75 - 485)
definitionCHROMAT_FILE: MSMg01no395_d23.b1 PHD_FILE: MSMg01no395_d23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:01 2005CHROMAT_FILE: MSMg01no395_d23.g1 PHD_FILE: MSMg01no395_d23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTCATCTGCTTCAGAGCTACTAAGAGCTGGCTTCCTGAGCTCATCTA
GTGACGAGTATCTCCTAGAGACCTCCGCTAATCGATCTTTTTTCTTTTCT
TTTTTCTTTTCCTTCCTTCTAATCTCTCCCCAGGTATTCTTACCTGACCT
AAACTTTTCCTCGGGTTCAAGACCCTTGGAAAGGCCTGTATACTTATTTT
GTGTACCATATTTTCTCTTTGCTCCTACTCTCTCTCCCCGCTTTACTTCT
GATAGATTGCCCTGAATTTCATCCAGAATTTTCAGCCCTATCTTAATCAC
CTGATAACATGTGAAAAGGAACAAAAGGGCTCCTAACATTAGAAAAAATT
CAAGGCCAAACATTTTCCACTTTACTTCTGATAGACTGTCTTGAATTTCC
TTAGAAAGTTCAAGGCCAGGCGTACCTCGTAAAGCTGTACTCACTGGTAC
TCTCGTTCCCCAGCTGNNAAAGTCTGAAATCATGCAGTTGAATCCTTCTT
ACCAGNCTGCTTTTACGGAACTTTATTACCGCGACCCGCAGTTCTGGTTC
TGAAAGAAGGAACTTCCTTGTGCCGGGGAAACCCCGTCCCAAGTTCCTCC
GGGTTTTTCTTCCCGAAATTTTTCCTCCCGGGTTTCGGCCCAATTTAAAT
AAGGTTCCCGCCCCCGGGGGAAAACTCCCACCCAACCCTTTGTGGGAATT
TTTGTTTTTTTTTTTTTACCCGAGGGGAGGCCCCCCCCCCCCCA

GATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTGCCCCATTTTT
TAATGGGCTTATTCATTTTTATTTTTTATTTTTTTATTTGGTTTGGTTTG
GTTTTACCGCCTGAATGGGTGAGGGGTAGCTAATAATAGTTTATTGTTTG
TGCTAGTTGGAAATTAAAAAGGTTTTTTAAGGAAAAATTAATATTTAGGC
ATGTTTTTTTGGAAACACCTTCTGTTTTATTTTTCTCATCTGAATCAAAA
GGCAAACAATGTATCATTTTACTTATATTAGGGACATCAGATAACTTTGA
TCATCCTGGCACAAAAATCATTTATATAAAAGATAGAAATGATTTTGCCA
TTTAGTTATTTTGTTTAACATTAAGTTAAAGTTCTTGGTATTTGATTTAG
CTGTTAAAAATAAATAAATGTTTAAATAAATTTTTCATAGACNAGGCTAG
TCAATTACTTATTTCAAATTACTAAGATTACTTCTGCCTGAATTTTTATA
TAAAGCCTTTTTGCTATTTACCCTCCTTTGCTTATTCCATTTTTAAAGGT
GGGCCCCTATTTTTTCACTAGAAAAAAAAGAATTCTCCTTTATTTTTTGG
GGAGGCCATTTTAAGAAAAATAAATTCTGTTTTTTTAAGTTACTTTCTAA
GAAAAGAACCTGTTTCTTGTTCAAAAAAAAAGGCTCTGGAAAAAAATATT
TTTAAATTCCTCTGGGGGAGATTCTCCTCTCTCCCCGCCTAAATTAGAAA
AACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_d23.g1 MSMg01no395_d23.g1 CHROMAT_FILE:
MSMg01no395_d23.g1 PHD_FILE: MSMg01no395_d23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:02 2005
         (411 letters)



>mm_chr13_64824793_64825603
          Length = 811

 Score =  779 bits (403), Expect = 0.0
 Identities = 409/411 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtttagctctgtgccccattttttaatgggcttattcatttttattttttatttttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtttagctctgtgccccattttttaatgggcttattcatttttattttttatttttt 260

                                                                       
Query: 61  tatttggtttggtttggttttaccgcctgaatgggtgaggggtagctaataatagtttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatttggtttggtttggttttaccgcctgaatgggtgaggggtagctaataatagtttat 320

                                                                       
Query: 121 tgtttgtgctagttggaaattaaaaaggttttttaaggaaaaattaatatttaggcatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtttgtgctagttggaaattaaaaaggttttttaaggaaaaattaatatttaggcatgt 380

                                                                       
Query: 181 ttttttggaaacaccttctgttttatttttctcatctgaatcaaaaggcaaacaatgtat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttttggaaacaccttctgttttatttttctcatctgaatcaaaaggcaaacaatgtat 440

                                                                       
Query: 241 cattttacttatattagggacatcagataactttgatcatcctggcacaaaaatcattta 300
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cattttacttataaaagggacatcagataactttgatcatcctggcacaaaaatcattta 500

                                                                       
Query: 301 tataaaagatagaaatgattttgccatttagttattttgtttaacattaagttaaagttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tataaaagatagaaatgattttgccatttagttattttgtttaacattaagttaaagttc 560

                                                              
Query: 361 ttggtatttgatttagctgttaaaaataaataaatgtttaaataaattttt 411
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttggtatttgatttagctgttaaaaataaataaatgtttaaataaattttt 611


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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