BAC Information

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BAC

Clone NameMSMg01-395N10
Chromosome13 (Build37)
Map Location 24,914,863 - 24,915,219
singlet/doubletsinglet
Overlap geneThem2
Upstream geneSlc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537
Downstream geneTtrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1, Tpi-rs8, LOC214973
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395N10.T7 (MSMg01no395_n10.b1)MSMg01-395N10.TJ (MSMg01no395_n10.g1)
ACCAG496558AG496559
length795810
length of high quality
(start - end)
357 (72 - 428)243 (74 - 316)
definitionCHROMAT_FILE: MSMg01no395_n10.b1 PHD_FILE: MSMg01no395_n10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:48 2005CHROMAT_FILE: MSMg01no395_n10.g1 PHD_FILE: MSMg01no395_n10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTTTATAACXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCG
CGGAATTCAGCCTTTTCCATCACTGCTTGCAGGTCCTCTCCGATTTCTAA
CGTACAATGGAGAGCATCACCCAGGAGACACCAGGTCGGAAGCAGTGTTC
CTTCGGAAGCTCTTTCAGAGGTCTGTCCATGGTGGCAGGCACAGCGTGTT
TCCCTCCACCATCGCCTGCTCCAGAAACTGCACGTACGTGCTCCCACGAA
CAGGCTGTTCCCTCCCTCTTCCTTTCCCCATATCACACGTGCTTGCAAGC
AGGTCACACACGGTGAACTTTCTTCTATCAAAATCTTTCACTATTGAGAA
CACTTTTTTGGTTTTCCCAGACAAAATTTGTAATGACCTCTAACTTCTTT
CTGATCTTGCCTCTACCTTCTAAGTGCTGGTATGACTGATGTGCCCACCA
TGTCCAGTTGTCCGGCATACACAGCACCGGGGACTAATACCTGGGTTCCG
TGTATGCCATGTTTTGCACCCTCTGAGCTACTTTTCTCCACACCCTCTTT
TTTTCTTTTTACAGACTTGCCTAAAAGTGTCCCCTCTTCTTTTGTCCTTA
CTGGGAAACCCCTCCCGTTTTTTGCCCGTTTTTCTTTCCCCCCCGATTCT
TTTTTTTTTCTTTTCCCACCCCCCCCCTCTTTTTCCCTCTCCCCTATTAA
CTTCTTCTTCCTCCTTCTCAACCATTTTCTTCTCCATTATTTCTCTTTCT
CCGCTACTTTTTCCTCCCTTTTTCTTTTTTTCTCTTTTCCTCCTA
CTCAATGAAATGTGTAGGCCTGGCGGNCGCCTGTTCTAAAATTTAGGNGA
ACTATAGATTTATCAGAAGAAATCCAGGGCAGCCTGAGCTATAGTGTGAG
TCTCAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGAT
TTATGTATTTATGTATTTATTTATTTATTTAATGTATATGAGCATGCTGT
AGTTGACACATCAGAAGAGGGCATCAGATCTCATTACAGATGGTTGTGAT
TCACCATGTGGTTTCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTC
AGTGCTCTTAACCTCCGTGCCTTATCTCCAGCCAGAGACCCTGTCTCTTA
AAATGGAAAGGACCTCAAATCCAGAACGTCTGCGCGAAGCTGTTGTGACA
GCATGTCTGTTTGGTGAATGCACTGTGTTTTATGCTCAAAGTTAGTAACA
TATGTAGCCCAAGGTTCTGTATGCGACTCTAATATTGAATGTCCTTGCTC
GGTTGTAGGCTGCCAACTGCCACTATTTATTATTCCCCCACTACCGTCTC
ACCTGTATAGTATACCTCTCAACGTGTTTCCTACCGTTGTTATCTCGTCT
TTTTTTTCCCCTTCTTCCTTTTTATTTCTTTAATCTCCCGCCCCGCTTTT
TTTTTTTTTTTTTCCTTTCCCCTACCTATCATATACCTCTTCCCCTTTTC
TACCCCCATTCCCTCTCATTCCTCTCTCCTTTTTTTCCCCCTTTATTCCT
TCCCTTTCCTTATTTTTCTTTCCCCTCTTTTTATTCCGCTTTCTCTCTCT
TTCTTTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_n10.b1 MSMg01no395_n10.b1 CHROMAT_FILE:
MSMg01no395_n10.b1 PHD_FILE: MSMg01no395_n10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:48 2005
         (357 letters)



>mm_chr13_24914663_24915419
          Length = 757

 Score =  659 bits (341), Expect = 0.0
 Identities = 353/357 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgcttgcaggtcctctccgatttctaacgtacaatggagagcatcacccaggagacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgcttgcaggtcctctccgatttctaacgtacaatggagagcatcacccaggagacac 260

                                                                       
Query: 61  caggtcggaagcagtgttccttcggaagctctttcagaggtctgtccatggtggcaggca 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 caggtcggaagcagtgttccttcggaagctctttcagaggtctgtctatggtggcaggca 320

                                                                       
Query: 121 cagcgtgtttccctccaccatcgcctgctccagaaactgcacgtacgtgctcccacgaac 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 cagcgtgtttccctccaccatcgcctgctccaggaactgcacgtacgtgctcccacgaac 380

                                                                       
Query: 181 aggctgttccctccctcttcctttccccatatcacacgtgcttgcaagcaggtcacacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggctgttccctccctcttcctttccccatatcacacgtgcttgcaagcaggtcacacac 440

                                                                       
Query: 241 ggtgaactttcttctatcaaaatctttcactattgagaacacttttttggttttcccaga 300
           ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtgaacattcctctatcaaaatctttcactattgagaacacttttttggttttcccaga 500

                                                                    
Query: 301 caaaatttgtaatgacctctaacttctttctgatcttgcctctaccttctaagtgct 357
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaaatttgtaatgacctctaacttctttctgatcttgcctctaccttctaagtgct 557


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 757
Length adjustment: 9
Effective length of query: 348
Effective length of database: 748
Effective search space:   260304
Effective search space used:   260304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)