BAC Information

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BAC

Clone NameMSMg01-395P04
Chromosome13 (Build37)
Map Location 73,204,362 - 73,402,701
singlet/doubletdoublet
Overlap geneLOC621486, Irx4
Upstream geneLOC100042828, LOC100042832, LOC100042836, Irx2
Downstream geneLOC100042864, Ndufs6, Mrpl36, Aytl2, Slc6a3, Clptm1l, Tert, Slc6a18, Slc6a19, Slc12a7, Nkd2, EG666360, Trip13, Brd9, Zdhhc11, LOC100042909, 2900041A09Rik, LOC621824, Cep72, Slc9a3, Exoc3, Ahrr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395P04.T7 (MSMg01no395_p04.b1)MSMg01-395P04.TJ (MSMg01no395_p04.g1)
ACCAG496642AG496643
length763757
length of high quality
(start - end)
497 (48 - 544)565 (79 - 643)
definitionCHROMAT_FILE: MSMg01no395_p04.b1 PHD_FILE: MSMg01no395_p04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:57 2005CHROMAT_FILE: MSMg01no395_p04.g1 PHD_FILE: MSMg01no395_p04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,402,208 - 73,402,701)(73,204,362 - 73,204,926)
sequence
GAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAAGGTCTTGCGTGCCTTCTCAACAAGCATGTCTGGCCCAAGT
GTTTGCTAGGGTCCCCCAGGGTACAGTTTGAAGGGTTAAACAAGAGGGAA
TTCAGATCCACTAACAGGATTTTACTAGCTCCCCTAATCCTCCTTCCACA
CAAGTCATGTTTGTTCAGTATAAGGGCCAGCCAGTCAAGGACATGCTTAT
GTGGGAAATGACATCTAGTGGTGGCTCTTCCCTCTCCCATCCCCGTTGTC
AGACCGTTGTAGGAGTCCCTTTACTTGAGGAGCAGAGGAATAGGGGTATC
CAAACTGCGGGTAGGACATGGCGGGTGCGGCCTAAGAAGGTCTGAGGGGC
CGTTGGGGTCCTGTGCACAGCGCGCGCACTGCTCCGGAGTTGTAGGATCC
TAGGCTCTGGGAGGACAGAGCAAGAGGTGGTTAGTTCACCCATATGCTGC
TCAAACTTTCCTAACCAGGTAAGTAAGTGAGTGATCTTTCTCTTAGCGAT
TCTCTTAGTTTCCAAGTCTGAACACTTCACAGGGCTCTGGGACCGATTGG
CCTCGCTGCGATGATAGAAATACTATTTTGGCAAACAGAACAGCTACCGG
TTACACAAATACTACCCAAATCTAATAACTGAGGTCTGTTCAGTCAGACG
GGTGCGGCTTTTAAGTGACAGAAGCGGTGACCTCAGCTCCCTCTTGTGGT
TGGTTTCGGGCCC
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGAATGCCCTGGCTTTGGCT
GAAAAACAGTGTCTCCCAAAACCACAGCAGATTTGGGCAGTAAACATGGT
ACATAAATCATCACCTGCTGTACCTTCTTCCCAGAGGTGATCCAGGGATG
AGGCTATAAAAACAGTTTGAGATGCTGATGCTGATGTTCATGTTGCGATG
CTCTCCTTTGCAGATCTCCACAGGAACAAGTGTCAGGACCAGTCACAGAA
TCCGCTTTTATCTTCCCTTGCCCCTCTGATCACTAAAGTCTCAGAATGCA
CAGAAACTTCTCTCTAGAACATTCTGCAGCCCCGTTTCACCAAGCAACTC
CTCAACCTAGCCTTATGGAGATGTACGTCGTAGGAGTGAGTTTCCCTGTA
AAGTCTAAAATTTTTTCTCTCTGTTCGGCACCAGAACATTAATAACCCAG
ACATTCACTTCTCTACCAGTCCATGATCACCTACCCACCCCTAGCCCCCT
TGGCACTGAAGGCTCCTTCTACAAACATAGGCAGAGGTCTGCAATAGAAC
CTGTCTGCAGATCCTGAGCCAGTCCAGACAACCGCAAAGCAGATGGATGG
TACTCCTGACAGCCCTTCCCTGGCAGGNTCCTGATCCTTGGGCTCCAGAA
AAGCCTGCACAAAGGCTAACAGGCTTCGTGGAAAGAAAAATCATTTCTCC
TTCGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_p04.b1 MSMg01no395_p04.b1 CHROMAT_FILE:
MSMg01no395_p04.b1 PHD_FILE: MSMg01no395_p04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:57 2005
         (497 letters)



>mm_chr13_73402005_73402901
          Length = 897

 Score =  909 bits (470), Expect = 0.0
 Identities = 488/494 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccaaggtcttgcgtgccttctcaacaagcatgtctggcccaagtgtttgctagg 63
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ggaattccaaggtcctgtgtgccttctcaacaagcatgtctggcccaagtgtttgctagg 638

                                                                       
Query: 64  gtcccccagggtacagtttgaagggttaaacaagagggaattcagatccactaacaggat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gtcccccagggtacagtttgaagggttaaacaagagggaattcagatccactaacaggat 578

                                                                       
Query: 124 tttactagctcccctaatcctccttccacacaagtcatgtttgttcagtataagggccag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tttactagctcccctaatcctccttccacacaagtcatgtttgttcagtataagggccag 518

                                                                       
Query: 184 ccagtcaaggacatgcttatgtgggaaatgacatctagtggtggctcttccctctcccat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ccagtcaaggacatgcttatgtgggaaatgacatctagtggtggctcttccctctcccat 458

                                                                       
Query: 244 ccccgttgtcagaccgttgtaggagtccctttacttgaggagcagaggaataggggtatc 303
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 457 ccccgttgtcagaccgttgtaggagtccctttacctgaggagcagaggaataggggtatc 398

                                                                       
Query: 304 caaactgcgggtaggacatggcgggtgcggcctaagaaggtctgaggggccgttggggtc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 caaactgcgggtaggacatggcgggtgcggcctaagaaggtctgaggggccgttggggtc 338

                                                                       
Query: 364 ctgtgcacagcgcgcgcactgctccggagttgtaggatcctaggctctgggaggacagag 423
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ctgtgcacagcgtgggcactgctccggagttgtaggatcctaggctctgggaggacagag 278

                                                                       
Query: 424 caagaggtggttagttcacccatatgctgctcaaactttcctaaccaggtaagtaagtga 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 caagaggtggttagttcacccatatgctgctcaaactttcctaaccaggtaagtaagtga 218

                         
Query: 484 gtgatctttctctt 497
           |||| |||||||||
Sbjct: 217 gtgacctttctctt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no395_p04.g1 MSMg01no395_p04.g1 CHROMAT_FILE:
MSMg01no395_p04.g1 PHD_FILE: MSMg01no395_p04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:57 2005
         (565 letters)



>mm_chr13_73204162_73205126
          Length = 965

 Score = 1077 bits (557), Expect = 0.0
 Identities = 563/565 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggaatgccctggctttggctgaaaaacagtgtctcccaaaaccacagcagatttgggc 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 caggaatgccctggctttggctgaaaaacagtgtctcccaaaaccatagcagatttgggc 260

                                                                       
Query: 61  agtaaacatggtacataaatcatcacctgctgtaccttcttcccagaggtgatccaggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtaaacatggtacataaatcatcacctgctgtaccttcttcccagaggtgatccaggga 320

                                                                       
Query: 121 tgaggctataaaaacagtttgagatgctgatgctgatgttcatgttgcgatgctctcctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaggctataaaaacagtttgagatgctgatgctgatgttcatgttgcgatgctctcctt 380

                                                                       
Query: 181 tgcagatctccacaggaacaagtgtcaggaccagtcacagaatccgcttttatcttccct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcagatctccacaggaacaagtgtcaggaccagtcacagaatccgcttttatcttccct 440

                                                                       
Query: 241 tgcccctctgatcactaaagtctcagaatgcacagaaacttctctctagaacattctgca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcccctctgatcactaaagtctcagaatgcacagaaacttctctctagaacattctgca 500

                                                                       
Query: 301 gccccgtttcaccaagcaactcctcaacctagccttatggagatgtacgtcgtaggagtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gccccgtttcaccaagcaactcctcaacctagccttatggagatgtacgtcgtaggagtg 560

                                                                       
Query: 361 agtttccctgtaaagtctaaaattttttctctctgttcggcaccagaacattaataaccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtttccctgtaaagtctaaaattttttctctctgttcggcaccagaacattaataaccc 620

                                                                       
Query: 421 agacattcacttctctaccagtccatgatcacctacccacccctagcccccttggcactg 480
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 621 agacattcacttctctaccagtccatgatcacctacccacccttagcccccttggcactg 680

                                                                       
Query: 481 aaggctccttctacaaacataggcagaggtctgcaatagaacctgtctgcagatcctgag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaggctccttctacaaacataggcagaggtctgcaatagaacctgtctgcagatcctgag 740

                                    
Query: 541 ccagtccagacaaccgcaaagcaga 565
           |||||||||||||||||||||||||
Sbjct: 741 ccagtccagacaaccgcaaagcaga 765


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)