BAC Information

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BAC

Clone NameMSMg01-396E09
Chromosome13 (Build37)
Map Location 57,448,189 - 57,448,526
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040926, AU042651, Il9, Fbxl21, Lect2, Tgfbi, Smad5, EG627415, Trpc7, LOC100040995
Downstream geneSpock1, Klhl3, Hnrpa0, 5133401N09Rik, Ubqln1, LOC671252, Gkap1, Kif27
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396E09.T7 (MSMg01no396_e09.b1)MSMg01-396E09.TJ (MSMg01no396_e09.g1)
ACCAG496891AG496892
length743738
length of high quality
(start - end)
336 (61 - 396)461 (62 - 522)
definitionCHROMAT_FILE: MSMg01no396_e09.b1 PHD_FILE: MSMg01no396_e09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:21 2005CHROMAT_FILE: MSMg01no396_e09.g1 PHD_FILE: MSMg01no396_e09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCGCTAAACGACTCCTAATGCGAGAGATCCGCGGAATTCTCTTGTTT
CCTACCAGACACACACCGGTGTAAGGTTATCTACTGGGACATGTTAAACC
TCCCAGGAATTACTAACCTTTCAAAGAACAGTGACTCCCACCCACAGCAG
TCATCACCTGTCTCTGCATTAGTAACTGCCCATTACAAACAAAGGCTTCT
CTGACCAAGAGAACAGCAGATCTACAGATAAAAACAGATCTTAGACAGAG
GTCTAGTGACAAAATGGTTTAGGAAACCAAGGGCAGGTTCTGAGGGCCCA
TGATCTTTCTGCTGTGGGTTTTGACTGTGTACGGTGCCAGGAATGAATCT
CCTTTTGCTTCTGCAGAAAGGTAGAACATTAAATGTTTGCTTGTTTGCTC
GCTCGTTTGTTTGATACAGAGCTTCTCTGTGTATCTCTGGCTGTCCTGGA
GCTAACTCCGTAGACCAGGCTGTTCTTGAACTCATAAATTCTTCTGCCTC
TGCCTCCTTAGTTTTGCTATCTACGGCATGCACCACCACTGTTCAGCTGC
AATTATCTTTTTATTGAATATTGTCCTACCACGCCATGTCCCTTTACTCA
TTTTAGGTCTAATATAAACAATTTGTAACACTGAGTCTCTATTTTACCTA
ACTATCCCTTTGACCTTGAAACTTTAACACGTTTATCCAACCAACTCCCC
CTAATCCTCCCCCATTACTTTTTTTTCTTTTCTGTCCCCCCCC
TGAGGCCTGGAGGCCGCCTGGTTTCGNAATTTAGGTGAACTATAGAAGTT
TCCCCGGAATTCAGTCTCAAGATGGAGAGGCAGCAGAAGCACTGACTCTC
TGTGTTCCACTCTAATCCTGGCTCTCCCTAGTTCCTGTCTTTACTCGCTT
CATAACAATAGTCTTCAACTCGTTTCACTATCAGCTTTAAAGTCGAATTC
CATACTGTCAAGAAGATGCAACTGGATACAGGTTAGACTCTAGGTACCGC
TCATCCTCGGGTGACTGTTCACCACCCGTGAGTCTATGAACTAATATAGG
CGCTTCCTGTACTAGATGCTGGGACAGAGCTAAGGCGCTCCACACGAATT
CTTTCCCAAAGAGAAAAATCCATATGAAGGGAACAATAGAGCCAGCACCC
AGATAACAAACTAGATGTTGAACACATGTTCTTAACCCTGACCCCAAGTT
GGGTGGATGTGGGAAAACTTTGCTAATTAAGGCCAAAGTCCACCATGGCC
AGATAGCCTCTGAGCTTATCAGCAATGTGGAGGATGCCGTTCATTGGCAG
GCCTTCCCCTTCTGTGACCTTGTCTGGGGAATTCTAAGGACCTTGTCTGG
TGATTTATAAGCCTGTACACCCACCTCTACCTGAAGAATGTCATGTTATC
TTACTTGGATTACTGGATCATTTTCCTTTCTCCTGATAAGATCCCTCTCA
TTTATACTTGAGATTCCTTGAAAGCCTCCCTCTGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_e09.b1 MSMg01no396_e09.b1 CHROMAT_FILE:
MSMg01no396_e09.b1 PHD_FILE: MSMg01no396_e09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:21 2005
         (336 letters)



>mm_chr13_57447991_57448726
          Length = 736

 Score =  596 bits (308), Expect = e-175
 Identities = 330/338 (97%), Gaps = 2/338 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acacaccggtgtaaggttatctactgggacatgttaaacctcccaggaattactaacctt 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 acacaccagtgtaaggttatctactgggacatgttaaacctcccaggaattactaacctt 258

                                                                       
Query: 61  tcaaagaacagtgactcccacccacagcagtcatcacctgtctctgcattagtaactgcc 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 259 tcaaagaacagtgactcccacctacagcagtcatcacctgtctctgcattaataactgcc 318

                                                                       
Query: 121 cattacaaacaaaggcttctctgaccaagagaacagcaga--tctacagataaaaacaga 178
           |||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||
Sbjct: 319 cattacaaacaaaggcttctctgaccaagagaacagcacaaatctacagataaaaacaga 378

                                                                       
Query: 179 tcttagacagaggtctagtgacaaaatggtttaggaaaccaagggcaggttctgagggcc 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tcttagacagaggtctagtgacaaaatggtttaggaaaccaagggcaggttctgagggcc 438

                                                                       
Query: 239 catgatctttctgctgtgggttttgactgtgtacggtgccaggaatgaatctccttttgc 298
           ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 catgaccttcctgctgtgggttttgactgtgtacggtgccaggaatgaatctccttttgc 498

                                                 
Query: 299 ttctgcagaaaggtagaacattaaatgtttgcttgttt 336
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttctgcagaaaggtagaacattaaatgtttgcttgttt 536


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)