BAC Information

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BAC

Clone NameMSMg01-397I11
Chromosome13 (Build37)
Map Location 16,752,623 - 16,752,875
singlet/doubletsinglet
Overlap genenone
Upstream geneGli3, LOC665157, Inhba, LOC625181, LOC665191
Downstream gene5033411D12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397I11.T7 (MSMg01no397_i11.b1)MSMg01-397I11.TJ (MSMg01no397_i11.g1)
ACCAG497847AG497848
length825813
length of high quality
(start - end)
265 (51 - 315)126 (73 - 198)
definitionCHROMAT_FILE: MSMg01no397_i11.b1 PHD_FILE: MSMg01no397_i11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:59 2005CHROMAT_FILE: MSMg01no397_i11.g1 PHD_FILE: MSMg01no397_i11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCATAATTTGCGGCCGCTAAACGAATACTAAATCAATACATCCGCGGA
ATTCTGACTTTTTCAAAACACCTTACAATTGGGAGATAACAATGGAGGGT
CTCAGAGTCAGACCTTGGTCCGGGATGCTGGATTATTATTCTCCTCAATC
TTAAAAATTAGAAAAATTTGGCTCCATGGTACATGCAAGGTGATTGAATC
TCAAGATAGCCAAGAGACTGCAGGAATCATAGGGACTGTGGGCAAGGACT
GAAACAACTCCTGTTTAGAAGCTCAAGCTGGACTTACAGGGAAGAGATTA
GTGGAATCCTGGTGATTATGCTTTGAATAGAAACCAAAATTCCTATCAGG
TTATTTATTTGGCAGCATGGCAGTTATACCATGCAGTCTATAATGAACTG
CTATCCAGTACCACCCCCCCCCCCCTTGTACAATATCTGTTTTTTTTATC
CACCGTGCTTTCTATTTTTTTTCACTCATTCCTCCCCCATCCTACTCCTC
TTCTTCCTATTACTCTTTTCTTTTTTTTCTCCCCTTCCACCCTCTCTTCT
TCAATACCCCCCTTTCCATCTTTCTTCTTTTTTCCTTCACTTTTATTTAT
TCCTATATCTTTTCCTCTCCCTATTTTTCTCTTCCTTCTTCCTTTTTCTC
TTTTGATATTTTCCCCCTTCTTATCCTTCTTTCTTTCCCCCTCTATTTCT
TCTTCTTTTCTTTCCTCCTCCTTCCTTCCTTTTCCCCCATCTTTTATCTC
ATCTCTCCCCGTTATTCTTCCGTCCTTCTTCCCACTTATATCTTCTTATC
CATTCTCACTCACTTCTTTCCTTTN
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGATTCCAGCTTTAATGCATGGTGGTATAATA
GGATACAAGGAATTATTTTAATTTTGTTGTATCCATTGAGGATTTGTGAC
TGACTGTATGTTCTATTTTGGAGAAGGATGCATGGAGTACTAGGAAGAAG
GTATGTTGCTTTGCCCTTCCCCCTACCTTTTCATTTCTTCCAAATCCTTT
TTTTTTTCGCCCATCATACTATCTTTTATTTTTCTTTCTTTCCCTTAATC
CTCTCCCCCCATTTTAAATGCATTTTCCGCCGCCGACCACCCCCCCCACA
AAGACTTTTACCCCCCCCTTCTTTTTTTTCCTTTTTTTCTTCCTCTCTTT
TTTTTTTTTTTTCCCACCCCCTTTTTATTTTTTTTTCTTCCTTACCCCCT
CTCTATTTCTTCCAACTTTCCTTTTTTTTTCCTTTTACCCCCTTTCCGCT
CCCCCTTTCTTTCGCCCTCCCCCCTATTACTCCCCATACTTCTCTTCTTC
CTCATACTTCTTCCCTCCTTTTCATCACTTTCTTTTTTCTTCTTTTTATT
CTACTCTTCTCACACTATTCCCCTCATTTTACCTTTCTTTTTTCTTTCTC
GTGCCTCCTGTTCCCTCTTTTTTTCTCCTTCCCCCCCTCTTTTTTTATTC
TCTTTTTATCTTATCTCCTTTTCCCTTAATCCTTCCCATTATTATTTCCT
TATCCACCCCCCGCCCTTCCTCTTTTTTTATCCTCCCTCTCCTCTTTTCT
ATCCTTTCTATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_i11.b1 MSMg01no397_i11.b1 CHROMAT_FILE:
MSMg01no397_i11.b1 PHD_FILE: MSMg01no397_i11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:59 2005
         (265 letters)



>mm_chr13_16752410_16753075
          Length = 666

 Score =  466 bits (241), Expect = e-136
 Identities = 250/253 (98%), Gaps = 1/253 (0%)
 Strand = Plus / Plus

                                                                       
Query: 14  caaaacaccttacaa-ttgggagataacaatggagggtctcagagtcagaccttggtccg 72
           |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 caaagcaccttacaaattgggagataacaatggagggtctcagagtcagaccttggtccg 273

                                                                       
Query: 73  ggatgctggattattattctcctcaatcttaaaaattagaaaaatttggctccatggtac 132
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ggatgctggattattattctcctcaatcttaaaaattagaaaaatttggctccatggtac 333

                                                                       
Query: 133 atgcaaggtgattgaatctcaagatagccaagagactgcaggaatcatagggactgtggg 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 atgcaaggtgattgaatctcaagatagccaagagactgcaggaatcatagggactgtggg 393

                                                                       
Query: 193 caaggactgaaacaactcctgtttagaagctcaagctggacttacagggaagagattagt 252
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 caaggacagaaacaactcctgtttagaagctcaagctggacttacagggaagagattagt 453

                        
Query: 253 ggaatcctggtga 265
           |||||||||||||
Sbjct: 454 ggaatcctggtga 466


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 666
Length adjustment: 9
Effective length of query: 256
Effective length of database: 657
Effective search space:   168192
Effective search space used:   168192
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)