BAC Information

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BAC

Clone NameMSMg01-397K09
Chromosome13 (Build37)
Map Location 48,848,416 - 48,848,661
singlet/doubletsinglet
Overlap genenone
Upstream gene4931429P17Rik, Id4, LOC667351, Zfp169, A830005F24Rik, AW456874, Barx1
Downstream genePhf2, EG667415, BC010304, C030044B11Rik, Wnk2, Ninj1, 1110007C09Rik, Susd3, Fgd3, Bicd2, Ippk, Cenpp, Tes3-ps, Ecm2, Aspn, Omd, Ogn, Nol8, Iars
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397K09.T7 (MSMg01no397_k09.b1)MSMg01-397K09.TJ (MSMg01no397_k09.g1)
ACCAG497939AG497940
length777811
length of high quality
(start - end)
249 (69 - 317)245 (73 - 317)
definitionCHROMAT_FILE: MSMg01no397_k09.b1 PHD_FILE: MSMg01no397_k09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:09 2005CHROMAT_FILE: MSMg01no397_k09.g1 PHD_FILE: MSMg01no397_k09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGACCATCCGCGGAA
TTCTCCCTGTTTCTTTTCTAGCATCTAACTGCTCACATTCCTGACTCGTA
GCTTCCTTCTCTGTCGTCAAAGCCAGCAATGAGAGGTCCTGTCTTTCTCG
TGGCGTCTCACAGACTCTGCTCTCCTGCACAGAGTGCCCTGTGATTACAC
TCTGCCCACCCACACAATTCAAGACAGTATTTTTATTTTAAGGCAAGCCA
ATTGGCAACCTTTCTCCTGTCTTGCCACACGACAGTGTATGTACAGGTTC
TTGAGAGTGGAACGTGTTTTTTTTCGAGAGGCCATTGGTCTGCTGACTCC
AAAGCCCTTCTGGGATGGCTTTGCTTTCTTTCTAGTCTACTAACCCACCT
TCAGTAGTAGCTGTTCTAATGAAAGATCTCGCTTTCATTATTAGATATTA
GACTACATTCTCTATTCCTCTGTTTTCAAAGATAAACTTGGTGGGTGTAG
GTACTTGGTAACTGAGTTTATCCTTAAAGTTTTAGGGAGCTTTGAATGGA
GGTTCCCAGATCACACCACTGCTGGTCTTATCTGTTGATGCTCAAAGAAA
GTTGGTAACCCATTGGTTTTTATTAAGTCTGCTTCTTCTTTGCTGAGGGG
CCCATATCCAACTTTTTCCACAATTAAAATCCCATCTATGTCTTTTTACG
CCTGCTTCTTATCTACTTCGCATTTTCTCTCCTTACCTTCCATATAATAA
TTTATCTACTTCTTCCTTCTTTATTCG
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTAAGCTCCATTCTTTTTACCAAAGGTT
TCTTTTTTTCTTCTCACAGTTCGCCATGATGTAAAAAGGCCAGGTTGTGT
CTTCACCAGCACCGAGAAGAGGCCAGCCTATATCATGTGTAGGGAAAGAA
GGCTAGCCTACAGCATGGGCAGTGTGAGAGGGCTAGCCTGCACCTTCATG
AGCAGTATGAGGAGGCTAGCCTGCAGCATGGGCAGTATGGGGAGGCTAGC
CTCCAGTGTGGGCAGTATGAGTGGTTTAGCTTGCAGCATGGATGGTGTGA
GGAGGCTAGTCTGCTTCATGGGCAGTATGAGAGGTCTAGCCTGCAGCATG
GATGGTGTGAGCACCCCACCCCGTACCTTTCCCTATCTCTGCGTTGCTAC
ACCGTTGCTGTTTTTGTTTACCTCTCGTCTTATTTTCTCTTTCCTTCCCT
TACGCCCCGGCTGTTTTATTCCCCCCACCGCTTTTCCCCCCTTTCATCCC
TCCTTCCTCCGTCCTCTACCCTATTTCTCCTTCATACTCCTTCTCTCTCG
TTGTTTAACCTTACTCACACACCTGCACCCTCTTGTCCATTTTTTTTTTT
CACGCGCCCCTTCCTAGCCCCATTTTTTTTTTTTTTCTTTCCCCCTCCCT
TTACCTATTTTTCTCCCCCTTCATTGCTTATCCCCCTTGTCTCTCTTCAT
TCTTCCCCCCCCGGCTTTACGTTTTTTTTATTCTCCCTCCCATCTTTTTT
ATCTTCTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_k09.g1 MSMg01no397_k09.g1 CHROMAT_FILE:
MSMg01no397_k09.g1 PHD_FILE: MSMg01no397_k09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:09 2005
         (245 letters)



>mm_chr13_48848216_48848861
          Length = 646

 Score =  468 bits (242), Expect = e-136
 Identities = 245/246 (99%), Gaps = 1/246 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaagctccattcttttt-accaaaggtttctttttttcttctcacagttcgccatgatg 59
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaagctccattcttttttaccaaaggtttctttttttcttctcacagttcgccatgatg 260

                                                                       
Query: 60  taaaaaggccaggttgtgtcttcaccagcaccgagaagaggccagcctatatcatgtgta 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaaaaggccaggttgtgtcttcaccagcaccgagaagaggccagcctatatcatgtgta 320

                                                                       
Query: 120 gggaaagaaggctagcctacagcatgggcagtgtgagagggctagcctgcaccttcatga 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggaaagaaggctagcctacagcatgggcagtgtgagagggctagcctgcaccttcatga 380

                                                                       
Query: 180 gcagtatgaggaggctagcctgcagcatgggcagtatggggaggctagcctccagtgtgg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagtatgaggaggctagcctgcagcatgggcagtatggggaggctagcctccagtgtgg 440

                 
Query: 240 gcagta 245
           ||||||
Sbjct: 441 gcagta 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 646
Length adjustment: 9
Effective length of query: 236
Effective length of database: 637
Effective search space:   150332
Effective search space used:   150332
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)