BAC Information

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BAC

Clone NameMSMg01-399E15
Chromosome13 (Build37)
Map Location 23,919,663 - 23,919,903
singlet/doubletsinglet
Overlap genenone
Upstream geneV1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2
Downstream geneSlc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399E15.T7 (MSMg01no399_e15.b1)MSMg01-399E15.TJ (MSMg01no399_e15.g1)
ACCAG499187AG499188
length716732
length of high quality
(start - end)
249 (71 - 319)68 (92 - 159)
definitionCHROMAT_FILE: MSMg01no399_e15.b1 PHD_FILE: MSMg01no399_e15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:16 2005CHROMAT_FILE: MSMg01no399_e15.g1 PHD_FILE: MSMg01no399_e15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCTCXXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCCGAGAATCCGCGG
AATTCAGGGCTTATCGTAACTATTTCACAGAACATGACCAAGGGTCAGCG
GCTGCTTCCTTTCTACCTCATCCTCCTGCTGGATGCTGGAAAGTGCAGCA
CGTCCTGTCTAGGCATCAAGTCTTACATGAGAGAAGAGAAGAGAATGTGT
GGGAAGAATATGAAAAGAGACCCTATGCCACTTCATACTGCTACACTGAA
TGTGGAATATCCCCCTTAGTGTCTTATCTGTCTGAACACTTGGTCTCTAA
ATAATGGGGCTCTTCTGTATTTTTGTGGGGTCTTCAGAATATGGGGTTCA
TATGGAAGAAGTGAAGGGTGCAGGGACTGACTGCCCTTGAGGTTTACAGC
TCAACTCTGCTTCCTGCCCAACTTGTGAGTTAAGGTTTTAGAACTGCTAA
CTGATTAGTGTGTACTATGGAGTGGGGCATGTACATGCATGTGTACGCCA
GAGGATAACTTTGTGCAGTTAGCTCTCTTCTCCCATCCTTCCATATGCTC
TGGGAATAGAACTCAGTCCATCAAGGTTCAGCAACAAATGCTTTCTCCAC
TGATCAATGTCACTGGCCCTGTGCGCGGTTTGTTAACTCTAGTTATCTAG
CTTCTATTTGCTCCTTACACAAGACCCACCGTTGCTATTATTTCCACTAG
TATCATTGTTTGTTCC
TTCGATGCAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTACACAGATGAAGCTAACTTTGC
ATTCTTGACCTTCCTGTTTCTATTTTGAACATGCTGGGTGCTGGGGATAT
AGCTATTCTCTATTACACACAGCTCCTACCCCTTCACGTCCATTGCTATT
GTTTTTGAGAAAGGATCTTTCTCACTAGCCCTGGTTGATCTCGGAAGTCA
TTGTGCAGACCAGTTGCCCTTGGACTTGCAGCCATCTCCGTGCCTCTGAT
TCCCATGTGTTAGTGCCACCCTTATATAGTCGATTCGCCCTGCCTAATTT
CTTTAATTTGCGATTTGTATCCTTTATTCCCCGTTTATTTTAAGCCATCG
GACCGATTTATTATTTTTTATGCCTCCTATCCCTTACCCACCATTCTTAT
TTTAACCACCCCTAATTTCAGAGATTCGTGAGCCATCTCTATCCCTTACT
ACACCACTAGCACATTATTCTCGCACCATTTCCTATTTTTACCTCCCCCA
TCCCCCCATCTTTGTTCTCTACCCTAGCTGTTTTTGGCCCCGGCGCTTTT
ATTTTGCACCCCCTCCAAGTATTCTAATAATTCTTTCCTCGTTTATGTCC
TGAATGTGTCCCCCCCTGTTCTTTTATTCTTTTTTACCTTTCCCTTCCCG
CCCTTTCCCCTTTTTTCTCCCCCTCCCCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_e15.b1 MSMg01no399_e15.b1 CHROMAT_FILE:
MSMg01no399_e15.b1 PHD_FILE: MSMg01no399_e15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:16 2005
         (249 letters)



>mm_chr13_23919533_23920176
          Length = 644

 Score =  404 bits (209), Expect = e-117
 Identities = 236/247 (95%), Gaps = 6/247 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatttcacagaacatgaccaagggtcagcggctgcttcctttctacctcatcctcctgct 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 371 tatttcacagaacatgaccaagggtcagtggctgcttcctttctacctcatcctcctgct 312

                                                                       
Query: 61  ggatgctggaaagtgcagcacgtcctgtctaggcatcaagtcttacatgagagaagagaa 120
           |||||||||||||| |||||| |||||||||||||||||||||||  || ||||   |||
Sbjct: 311 ggatgctggaaagtacagcacttcctgtctaggcatcaagtctta--tgtgaga---gaa 257

                                                                       
Query: 121 gagaatgtgtgggaagaatatgaaaagagaccctatgccacttcatactgctacactgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gagaatgtgtgggaagaatatgaaaagagaccctatgccacttcatactgctacactgaa 197

                                                                       
Query: 181 tgtggaatatcccccttagtgtcttatctgtctgaacacttggtctctaaataatggggc 240
           |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 196 tgtggaatatcccc-ttagtgtcttatttgtctgaacacttggtctctaaataatggggc 138

                  
Query: 241 tcttctg 247
           |||||||
Sbjct: 137 tcttctg 131


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 644
Length adjustment: 9
Effective length of query: 240
Effective length of database: 635
Effective search space:   152400
Effective search space used:   152400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)